YBX3 (Erinaceus europaeus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSEEUG00000010415 T164538_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000009494 CSD 3 72

Links

Other CSD family TFs
Other Erinaceus europaeus TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001569801 Anisakis simplex ASIM_0001569801 I 0.000
CBG10855 Caenorhabditis briggsae CBG10855 I 0.000
CBG26996 Caenorhabditis briggsae CBG26996 I 0.000
CBG26996_CONSTRUCT PBM CONSTRUCTS CBG26996_CONSTRUCT D 0.000
CBN24827 Caenorhabditis brenneri CBN24827 I 0.000
CBN28056 Caenorhabditis brenneri CBN28056 I 0.000
CJA00680 Caenorhabditis japonica CJA00680 I 0.000
CJA08896 Caenorhabditis japonica CJA08896 I 0.000
CJA14829 Caenorhabditis japonica CJA14829 I 0.000
CRE00149 Caenorhabditis remanei CRE00149 I 0.000
HCOI01292200 Haemonchus contortus HCOI01292200 I 0.000
HPLM_0000769401 Haemonchus placei HPLM_0000769401 I 0.000
L596_g27472 Steinernema carpocapsae L596_g27472 I 0.000
L889_g1557 Steinernema feltiae L889_g1557 I 0.000
L889_g1891 Steinernema feltiae L889_g1891 I 0.000
L892_g17612 Steinernema scapterisci L892_g17612 I 0.000
L892_g4169 Steinernema scapterisci L892_g4169 I 0.000
L893_g28857 Steinernema glaseri L893_g28857 I 0.000
L893_g3565 Steinernema glaseri L893_g3565 I 0.000
L898_g9866 Steinernema monticolum L898_g9866 I 0.000
NECAME_08394 Necator americanus NECAME_08394 I 0.000
nhr-120 Caenorhabditis elegans WBGene00003710 I 0.000
nhr-141 Caenorhabditis elegans WBGene00017787 I 0.000
nhr-204 Caenorhabditis elegans WBGene00019816 D 0.000
PPA06637 Pristionchus pacificus PPA06637 I 0.000
PPA21777 Pristionchus pacificus PPA21777 I 0.000
PPA29597 Pristionchus pacificus PPA29597 I 0.000
scaffold251-EXSNAP2012.44 Pristionchus exspectatus scaffold251-EXSNAP2012.44 I 0.000
scaffold426-EXSNAP2012.35 Pristionchus exspectatus scaffold426-EXSNAP2012.35 I 0.000
scaffold43-EXSNAP2012.41 Pristionchus exspectatus scaffold43-EXSNAP2012.41 I 0.000
scaffold598-EXSNAP2012.5 Pristionchus exspectatus scaffold598-EXSNAP2012.5 I 0.000
scaffold826-EXSNAP2012.10 Pristionchus exspectatus scaffold826-EXSNAP2012.10 I 0.000