Carubv10004178m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10004178m.g T181264_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.933 0.933
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.933 0.933
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004178m FAR1 65 153

Links

Other FAR1 family TFs
Other Capsella rubella TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30106.m000672 Ricinus communis 30106.m000672 I 0.888
Bo6g054750 Brassica oleracea Bo6g054750 I 0.889
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I 0.955
Bra040696 Brassica rapa Bra040696 I 0.889
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I 1.000
Carubv10012703m.g Capsella rubella Carubv10012703m.g I 1.000
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I 0.888
Cucsa.180080 Cucumis sativus Cucsa.180080 I 0.708
Cucsa.180090 Cucumis sativus Cucsa.180090 I 0.921
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I 0.933
FAR1 Arabidopsis thaliana AT4G15090 D 0.922
FAR1 Vitis vinifera VIT_03s0017g01810 I 0.921
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I 0.921
GLYMA04G14850 Glycine max GLYMA04G14850 I 0.708
GLYMA06G47210 Glycine max GLYMA06G47210 I 0.708
GLYMA10G40510 Glycine max GLYMA10G40510 I 0.910
GLYMA20G26810 Glycine max GLYMA20G26810 I 0.899
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I 0.910
mgf008053m Mimulus guttatus mgf008053m I 0.886
PK04639.1 Cannabis sativa PK04639.1 I 0.910
Pm014858 Prunus mume Pm014858 I 0.910
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I 0.920
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I 0.910
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I 0.909
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I 0.808
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I 0.708
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I 0.865
TCM_002030 Theobroma cacao TCM_002030 I 0.910
TCM_013043 Theobroma cacao TCM_013043 I 0.769
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I 0.966