Cagra.3784s0001 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.3784s0001 T196436_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.862 0.944
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.834 0.861
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.834 0.861
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.834 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.834 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.722
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.722
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.823 0.778
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.823 0.778
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.823 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.823 0.750
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.823 0.750
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.819 0.722
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.819 0.722
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.819 0.722
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.819 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3784s0001.1.p GATA 170 205

Links

Other GATA family TFs
Other Capsella grandiflora TFs

607 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004627 Ricinus communis 29929.m004627 I
30138.m003942 Ricinus communis 30138.m003942 I
30174.m009082 Ricinus communis 30174.m009082 I
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I
Aquca_040_00115 Aquilegia coerulea Aquca_040_00115 N
BGIOSGA005075 Oryza indica BGIOSGA005075 I
Bo2g062840 Brassica oleracea Bo2g062840 I
Bo3g024180 Brassica oleracea Bo3g024180 I
Bo3g042890 Brassica oleracea Bo3g042890 I
Bo9g097630 Brassica oleracea Bo9g097630 I
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I
Bra022766 Brassica rapa Bra022766 I
Bra038324 Brassica rapa Bra038324 I
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I
Carubv10020369m.g Capsella rubella Carubv10020369m.g I
Carubv10026628m.g Capsella rubella Carubv10026628m.g I
cassava39122.m1 Manihot esculenta cassava39122.m1 I
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I
Ca_01426 Cicer arietinum Ca_01426 I
Ca_05711 Cicer arietinum Ca_05711 I
Ca_19449 Cicer arietinum Ca_19449 I
Ca_24655 Cicer arietinum Ca_24655 I
Ca_24733 Cicer arietinum Ca_24733 I
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I
Cla001541 Citrullus lanatus Cla001541 I
Cla002666 Citrullus lanatus Cla002666 I
Cla004156 Citrullus lanatus Cla004156 I
Cla018827 Citrullus lanatus Cla018827 I
Cla019331 Citrullus lanatus Cla019331 I
Cla019579 Citrullus lanatus Cla019579 I
Cucsa.054050 Cucumis sativus Cucsa.054050 I
Cucsa.113410 Cucumis sativus Cucsa.113410 I
Cucsa.157230 Cucumis sativus Cucsa.157230 I
Cucsa.198630 Cucumis sativus Cucsa.198630 I
Cucsa.349620 Cucumis sativus Cucsa.349620 I
Cucsa.392170 Cucumis sativus Cucsa.392170 I
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I
GLYMA0005S50 Glycine max GLYMA0005S50 I
GLYMA01G08056 Glycine max GLYMA01G08056 I
GLYMA02G13371 Glycine max GLYMA02G13371 I
GLYMA03G27195 Glycine max GLYMA03G27195 I
GLYMA04G32002 Glycine max GLYMA04G32002 I
GLYMA04G37391 Glycine max GLYMA04G37391 I
GLYMA05G38180 Glycine max GLYMA05G38180 I
GLYMA06G17700 Glycine max GLYMA06G17700 I
GLYMA08G01450 Glycine max GLYMA08G01450 I
GLYMA11G08905 Glycine max GLYMA11G08905 N
GLYMA16G05895 Glycine max GLYMA16G05895 I
GLYMA17G08840 Glycine max GLYMA17G08840 I
GLYMA19G26390 Glycine max GLYMA19G26390 I
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I
LPERR01G36700 Leersia perrieri LPERR01G36700 I
LPERR11G11330 Leersia perrieri LPERR11G11330 I
Lus10000643.g Linum usitatissimum Lus10000643.g I
Lus10007984.g Linum usitatissimum Lus10007984.g I
Lus10015764.g Linum usitatissimum Lus10015764.g I
Lus10018610.g Linum usitatissimum Lus10018610.g I
Lus10021141.g Linum usitatissimum Lus10021141.g I
Lus10036812.g Linum usitatissimum Lus10036812.g I
Lus10039846.g Linum usitatissimum Lus10039846.g I
MDP0000119458 Malus domestica MDP0000119458 I
MDP0000142582 Malus domestica MDP0000142582 N
MDP0000146640 Malus domestica MDP0000146640 I
MDP0000171877 Malus domestica MDP0000171877 I
MDP0000193702 Malus domestica MDP0000193702 I
MDP0000246046 Malus domestica MDP0000246046 I
MDP0000589558 Malus domestica MDP0000589558 I
MDP0000778465 Malus domestica MDP0000778465 I
MLOC_52321 Hordeum vulgare MLOC_52321 I
MTR_2g461920 Medicago truncatula MTR_2g461920 I
MTR_3g099080 Medicago truncatula MTR_3g099080 I
MTR_4g109770 Medicago truncatula MTR_4g109770 I
MTR_7g028740 Medicago truncatula MTR_7g028740 I
MTR_8g096780 Medicago truncatula MTR_8g096780 I
OBART01G42150 Oryza barthii OBART01G42150 I
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I
OMERI01G39190 Oryza meridionalis OMERI01G39190 I
OMERI11G11920 Oryza meridionalis OMERI11G11920 I
ONIVA01G48230 Oryza nivara ONIVA01G48230 I
OPUNC01G41070 Oryza punctata OPUNC01G41070 I
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I
OS01G0922600 Oryza sativa OS01G0922600 I
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I
Pavir.J02262 Panicum virgatum Pavir.J02262 I
Pavir.J28847 Panicum virgatum Pavir.J28847 N
Pavir.J30793 Panicum virgatum Pavir.J30793 N
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I
PK02140.1 Cannabis sativa PK02140.1 I
PK17790.1 Cannabis sativa PK17790.1 I
PK19500.1 Cannabis sativa PK19500.1 I
Pm024528 Prunus mume Pm024528 I
Pm025028 Prunus mume Pm025028 I
Pm030597 Prunus mume Pm030597 I
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I
Sb03g044160 Sorghum bicolor Sb03g044160 I
Sb05g017510 Sorghum bicolor Sb05g017510 I
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I
Si001804m.g Setaria italica Si001804m.g I
Si013747m.g Setaria italica Si013747m.g N
Si026656m.g Setaria italica Si026656m.g I
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I
SPL13A Arabidopsis thaliana AT5G50570 I
SPL13A Arabidopsis thaliana AT5G50670 D
SPL19 Oryza sativa OS11G0496600 I
SPL3 Vitis vinifera VIT_10s0003g00050 I
SPL6 Arabidopsis thaliana AT1G69170 I
TCM_008671 Theobroma cacao TCM_008671 I
TCM_011483 Theobroma cacao TCM_011483 I
TCM_014330 Theobroma cacao TCM_014330 I
TCM_014668 Theobroma cacao TCM_014668 I
TCM_017247 Theobroma cacao TCM_017247 N
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I