OB12G26670 (Oryza brachyantha)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OB12G26670 T221292_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.842 0.735
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB12G26670.1 Homeodomain 396 447

Links

Other Homeodomain family TFs
Other Oryza brachyantha TFs

1011 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
CC1G_07855 Coprinopsis cinerea CC1G_07855 N 0.000
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N 0.000
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.000
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.000
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
K437DRAFT_266676 Tilletiaria anomala K437DRAFT_266676 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
LALA0_S01e08702g Lachancea lanzarotensis LALA0_S01e08702g N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MYCTH_2294733 Myceliophthora thermophila MYCTH_2294733 N 0.000
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.000
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.000
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.000
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N 0.000
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N 0.000
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N 0.000
Phatr3_J50240 Phaeodactylum tricornutum Phatr3_J50240 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.000
TGME49_081900 Toxoplasma gondii TGME49_081900 N 0.000
Thaps11168 Thalassiosira pseudonana Thaps11168 N 0.000
Thaps22858 Thalassiosira pseudonana Thaps22858 N 0.000
Thaps23446 Thalassiosira pseudonana Thaps23446 N 0.000
Thaps24755 Thalassiosira pseudonana Thaps24755 N 0.000
Thaps25909 Thalassiosira pseudonana Thaps25909 N 0.000
Thaps5285 Thalassiosira pseudonana Thaps5285 N 0.000
Thapsdraft1840 Thalassiosira pseudonana Thapsdraft1840 N 0.000
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.000
XP_002490100.1 Pichia pastoris XP_002490100.1 N 0.000