OBART02G37570 (Oryza barthii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OBART02G37570 T245535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.782 0.782
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.782 0.782
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.782 0.782
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.701 0.701
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.701 0.701
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G37570.1 LOB 5 92

Links

Other LOB family TFs
Other Oryza barthii TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29625.m000702 Ricinus communis 29625.m000702 I
29801.m003176 Ricinus communis 29801.m003176 I
30170.m013868 Ricinus communis 30170.m013868 I
ABF1 Arabidopsis thaliana AT1G49720 D
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I
ABF2 Vitis vinifera VIT_18s0001g10450 I
ABF3 Arabidopsis thaliana AT4G34000 D
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I
ABF4 Arabidopsis thaliana AT3G19290 D
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I
BGIOSGA005551 Oryza indica BGIOSGA005551 I
BGIOSGA028831 Oryza indica BGIOSGA028831 I
BGIOSGA030899 Oryza indica BGIOSGA030899 I
Bo1g007700 Brassica oleracea Bo1g007700 I
Bo3g073080 Brassica oleracea Bo3g073080 I
Bo5g115300 Brassica oleracea Bo5g115300 I
Bo7g116570 Brassica oleracea Bo7g116570 I
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I
Bra022409 Brassica rapa Bra022409 I
Bra037533 Brassica rapa Bra037533 I
BRADI3G57960 Brachypodium distachyon BRADI3G57960 N
BZIP23 Oryza sativa OS02G0766700 I
BZIP46 Oryza sativa OS06G0211200 I
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I
Carubv10006251m.g Capsella rubella Carubv10006251m.g I
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I
Cla016272 Citrullus lanatus Cla016272 I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I
GRMZM2G033413 Zea mays GRMZM2G033413 I
GRMZM2G157722 Zea mays GRMZM2G157722 I
GRMZM2G478417 Zea mays GRMZM2G478417 I
GRMZM5G858197 Zea mays GRMZM5G858197 I
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I
LPERR02G27610 Leersia perrieri LPERR02G27610 I
LPERR08G14740 Leersia perrieri LPERR08G14740 I
LPERR09G09170 Leersia perrieri LPERR09G09170 I
Lus10002399.g Linum usitatissimum Lus10002399.g I
Lus10014066.g Linum usitatissimum Lus10014066.g I
Lus10014194.g Linum usitatissimum Lus10014194.g I
Lus10022720.g Linum usitatissimum Lus10022720.g I
Lus10027897.g Linum usitatissimum Lus10027897.g I
MDP0000248567 Malus domestica MDP0000248567 I
MDP0000296303 Malus domestica MDP0000296303 I
mgf002047m Mimulus guttatus mgf002047m I
mgf007524m Mimulus guttatus mgf007524m I
mgf014602m Mimulus guttatus mgf014602m I
MLOC_20326 Hordeum vulgare MLOC_20326 N
MLOC_53580 Hordeum vulgare MLOC_53580 N
MLOC_66546 Hordeum vulgare MLOC_66546 I
MTR_3g101780 Medicago truncatula MTR_3g101780 I
OB02G40680 Oryza brachyantha OB02G40680 I
OB08G24950 Oryza brachyantha OB08G24950 I
OB09G19140 Oryza brachyantha OB09G19140 I
OBART02G33770 Oryza barthii OBART02G33770 I
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I
OMERI02G32150 Oryza meridionalis OMERI02G32150 I
OMERI09G10130 Oryza meridionalis OMERI09G10130 I
ONIVA02G33490 Oryza nivara ONIVA02G33490 I
OPUNC08G15700 Oryza punctata OPUNC08G15700 I
OPUNC09G11090 Oryza punctata OPUNC09G11090 I
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I
OS09G0456200 Oryza sativa OS09G0456200 I
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I
Pavir.Ea03718 Panicum virgatum Pavir.Ea03718 I
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I
Pavir.J00256 Panicum virgatum Pavir.J00256 I
Pavir.J05659 Panicum virgatum Pavir.J05659 I
Pavir.J31353 Panicum virgatum Pavir.J31353 I
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I
PK02169.1 Cannabis sativa PK02169.1 I
PK18009.1 Cannabis sativa PK18009.1 D
Pm021430 Prunus mume Pm021430 I
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
Sb03g040970 Sorghum bicolor Sb03g040970 I
Sb04g034190 Sorghum bicolor Sb04g034190 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb10g007090 Sorghum bicolor Sb10g007090 I
Si003247m.g Setaria italica Si003247m.g I
Si006889m.g Setaria italica Si006889m.g I
Si013904m.g Setaria italica Si013904m.g I
Si017618m.g Setaria italica Si017618m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I
TCM_007074 Theobroma cacao TCM_007074 I
TCM_033824 Theobroma cacao TCM_033824 I
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I
Traes_6AL_E8CD2C02B Triticum aestivum Traes_6AL_E8CD2C02B N
Traes_6DL_F7015CE89 Triticum aestivum Traes_6DL_F7015CE89 N
Traes_7DS_C6A3C10A6 Triticum aestivum Traes_7DS_C6A3C10A6 N
TRIUR3_23754 Triticum urartu TRIUR3_23754 N
TRIUR3_26781 Triticum urartu TRIUR3_26781 I
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I