CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_37084
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_37084
T258102_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.783
0.783
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_37084.1
MADS box
13
35
YITNDSARKAMFKKKKKGPMKKV
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0003_569
Arabidopsis lyrata
Al_scaffold_0003_569
I
0.783
Aquca_007_00647
Aquilegia coerulea
Aquca_007_00647
I
0.739
Bostr.2392s0039
Boechera stricta
Bostr.2392s0039
I
0.783
chr6.LjT19B22.120.nd
Lotus japonicus
chr6.LjT19B22.120.nd
I
0.739
Cla009163
Citrullus lanatus
Cla009163
I
0.739
Eucgr.E01736
Eucalyptus grandis
Eucgr.E01736
I
0.739
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.913
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.773
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.783
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.826
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.913
evm.TU.contig_35868
Carica papaya
evm.TU.contig_35868
N
0.826
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.826
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.727
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.773
evm.TU.supercontig_100.9
Carica papaya
evm.TU.supercontig_100.9
N
0.739
evm.TU.supercontig_117.19
Carica papaya
evm.TU.supercontig_117.19
I
0.739
evm.TU.supercontig_118.30
Carica papaya
evm.TU.supercontig_118.30
I
0.870
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.826
evm.TU.supercontig_1256.1
Carica papaya
evm.TU.supercontig_1256.1
N
0.870
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.826
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.826
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.826
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.783
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.783
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.826
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.783
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.783
MDP0000925348
Malus domestica
MDP0000925348
I
0.826
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.739
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.870
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.870
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.826
TCM_026842
Theobroma cacao
TCM_026842
I
0.826
Thhalv10012000m.g
Eutrema salsugineum
Thhalv10012000m.g
I
0.739
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.870