Cucsa.307040 (Cucumis sativus)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Cucsa.307040 T321471_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.307040.1 S1FA 20 85
Cucsa.307040.2 S1FA 13 78

Links

Other S1FA family TFs
Other Cucumis sativus TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29805.m001471 Ricinus communis 29805.m001471 I 0.803
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.788
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.803
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.727
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.727
Bo00703s130 Brassica oleracea Bo00703s130 I 0.727
Bo00703s150 Brassica oleracea Bo00703s150 I 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
Bo3g061880 Brassica oleracea Bo3g061880 I 0.727
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
Bo6g067310 Brassica oleracea Bo6g067310 I 0.742
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.712
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.742
Bra003132 Brassica rapa Bra003132 I 0.742
Bra006994 Brassica rapa Bra006994 I 0.712
Bra029784 Brassica rapa Bra029784 I 0.758
Bra034084 Brassica rapa Bra034084 I 0.727
Bra039779 Brassica rapa Bra039779 I 0.712
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.758
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.742
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.742
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.742
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.879
Ca_12027 Cicer arietinum Ca_12027 I 0.758
Ca_12028 Cicer arietinum Ca_12028 I 0.727
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.758
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.848
Cla018106 Citrullus lanatus Cla018106 I 0.985
Cla018556 Citrullus lanatus Cla018556 I 0.864
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.879
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.848
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.803
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.758
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.734
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.803
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.818
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.833
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.848
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.803
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.833
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.848
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.833
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.768
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.712
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.788
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.712
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.788
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.742
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.818
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.818
MDP0000276000 Malus domestica MDP0000276000 N 0.773
mgf000337m Mimulus guttatus mgf000337m I 0.803
mgf004062m Mimulus guttatus mgf004062m I 0.818
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.758
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.758
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.773
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.788
OB04G18770 Oryza brachyantha OB04G18770 I 0.742
OB04G18780 Oryza brachyantha OB04G18780 I 0.742
OBART04G11650 Oryza barthii OBART04G11650 N 0.727
OBART04G11660 Oryza barthii OBART04G11660 N 0.727
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.727
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.727
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.712
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.727
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.727
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.727
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.848
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.727
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.727
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.727
OS04G0408900 Oryza sativa OS04G0408900 N 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.758
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.742
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.833
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.788
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.803
PK08477.1 Cannabis sativa PK08477.1 I 0.758
Pm002519 Prunus mume Pm002519 N 0.818
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.788
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.803
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.818
S1FA1 Arabidopsis thaliana AT3G53370 I 0.765
S1FA2 Arabidopsis thaliana AT2G37120 I 0.712
S1FA2 Oryza sativa OS04G0408700 N 0.727
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.818
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.818
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.758
Si011030m.g Setaria italica Si011030m.g N 0.742
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.848
TCM_022113 Theobroma cacao TCM_022113 I 0.864
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.742
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.727
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.758
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.758
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.758
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.864
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.833