Pavir.Ga01929 (Panicum virgatum)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Pavir.Ga01929 T321517_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga01929.1.p S1FA 14 79
Pavir.Ga01929.2.p S1FA 14 79

Links

Other S1FA family TFs
Other Panicum virgatum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29805.m001471 Ricinus communis 29805.m001471 I 0.727
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.742
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.833
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.864
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.894
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.864
Bo00703s130 Brassica oleracea Bo00703s130 I 0.727
Bo00703s150 Brassica oleracea Bo00703s150 I 0.727
Bo6g067310 Brassica oleracea Bo6g067310 I 0.742
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.712
Bra003132 Brassica rapa Bra003132 I 0.742
Bra006994 Brassica rapa Bra006994 I 0.712
Bra039779 Brassica rapa Bra039779 I 0.727
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.924
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.742
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.712
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.742
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.712
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.742
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.727
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.742
Cla018106 Citrullus lanatus Cla018106 I 0.758
Cla018556 Citrullus lanatus Cla018556 I 0.758
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.773
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.758
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.788
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.742
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.758
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.758
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.727
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.712
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.742
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.788
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.742
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.924
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.924
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.803
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.712
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.742
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.879
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.833
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.727
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.727
MDP0000276000 Malus domestica MDP0000276000 N 0.788
mgf000337m Mimulus guttatus mgf000337m I 0.758
mgf004062m Mimulus guttatus mgf004062m I 0.727
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.924
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
OB04G18770 Oryza brachyantha OB04G18770 I 0.909
OB04G18780 Oryza brachyantha OB04G18780 I 0.879
OBART04G11650 Oryza barthii OBART04G11650 N 0.894
OBART04G11660 Oryza barthii OBART04G11660 N 0.864
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.894
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.864
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.879
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.864
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.894
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.864
OPUNC04G09650 Oryza punctata OPUNC04G09650 I 0.788
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.864
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.742
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.894
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.864
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.894
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.864
OS04G0408900 Oryza sativa OS04G0408900 N 0.864
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.955
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.758
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.727
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.712
Pm002519 Prunus mume Pm002519 N 0.773
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.727
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.742
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.773
S1FA1 Arabidopsis thaliana AT3G53370 I 0.758
S1FA2 Oryza sativa OS04G0408700 N 0.894
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.758
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.758
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.924
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.727
Si011030m.g Setaria italica Si011030m.g N 0.955
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.773
TCM_022113 Theobroma cacao TCM_022113 I 0.758
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.727
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.909
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.909
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.909
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.758
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.727