GLYMA18G36960 (Glycine max)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GLYMA18G36960 T322597_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.960 0.827
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.941 0.707
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.933 0.733
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.933 0.733
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.933 0.733
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.921 0.680
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.920 0.707
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.913 0.707
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.913 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.913 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.913 0.720
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.910 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.910 0.707
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.906 0.733
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.906 0.733
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.906 0.733
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.903 0.733
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.893 0.693
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.893 0.693
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.893 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA18G36960.1 SBP 77 151

Links

Other SBP family TFs
Other Glycine max TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00056p00209700 Amborella trichopoda AMTR_s00056p00209700 N
Aquca_001_00199 Aquilegia coerulea Aquca_001_00199 N
Bo4g120510 Brassica oleracea Bo4g120510 N
Bostr.11793s0002 Boechera stricta Bostr.11793s0002 N
Bra014857 Brassica rapa Bra014857 N
Cagra.2252s0020 Capsella grandiflora Cagra.2252s0020 N
Carubv10016920m.g Capsella rubella Carubv10016920m.g N
cassava18263.valid.m1 Manihot esculenta cassava18263.valid.m1 N
Ca_14896 Cicer arietinum Ca_14896 N
Ciclev10007968m.g Citrus clementina Ciclev10007968m.g N
Eucgr.C00620 Eucalyptus grandis Eucgr.C00620 N
gene09028-v1.0-hybrid Fragaria vesca gene09028-v1.0-hybrid N
GLYMA14G22170 Glycine max GLYMA14G22170 N
GLYMA17G26620 Glycine max GLYMA17G26620 N
Gorai.010G103500 Gossypium raimondii Gorai.010G103500 N
MDP0000135483 Malus domestica MDP0000135483 N
MDP0000315125 Malus domestica MDP0000315125 N
mgf012819m Mimulus guttatus mgf012819m N
MTR_1g007370 Medicago truncatula MTR_1g007370 N
orange1.1g009449m.g Citrus sinensis orange1.1g009449m.g N
PDK_20s1533271g001 Phoenix dactylifera PDK_20s1533271g001 N
PGSC0003DMG400025465 Solanum tuberosum PGSC0003DMG400025465 N
PK05603.1 Cannabis sativa PK05603.1 N
Pm005207 Prunus mume Pm005207 N
Pm005208 Prunus mume Pm005208 N
PRUPE_ppa003696mg Prunus persica PRUPE_ppa003696mg N
SapurV1A.0890s0100 Salix purpurea SapurV1A.0890s0100 N
SIGC Arabidopsis thaliana AT3G53920 N
SIGC Arabidopsis lyrata Al_scaffold_0005_2291 N
SIGC Vitis vinifera VIT_04s0008g00600 N
Solyc08g065970.2 Solanum lycopersicum Solyc08g065970.2 N
TCM_037242 Theobroma cacao TCM_037242 N
Thhalv10010251m.g Eutrema salsugineum Thhalv10010251m.g N