HMGB6 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT4G23800 T326483_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.597 0.776
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.597 0.776
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G23800.1 Sox 138 206
AT4G23800.1 Sox 255 321
AT4G23800.1 Sox 379 447
AT4G23800.2 Sox 138 206
AT4G23800.2 Sox 255 321
AT4G23800.2 Sox 373 441

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.491
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.431
Bo1g037180 Brassica oleracea Bo1g037180 I 0.652
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.582
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.710
Bra013731 Brassica rapa Bra013731 I 0.652
Bra035256 Brassica rapa Bra035256 I 0.513
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.452
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.712
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.591
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.600
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.686
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.455
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.444
Cla011101 Citrullus lanatus Cla011101 I 0.481
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.496
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.466
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.475
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.608
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.530
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.446
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.437
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.493
HMGB13 Arabidopsis thaliana AT4G11080 D 0.597
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.490
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.515
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.495
MDP0000268093 Malus domestica MDP0000268093 I 0.482
mgf015439m Mimulus guttatus mgf015439m I 0.457
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.448
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.442
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.445
PK10992.1 Cannabis sativa PK10992.1 I 0.458
Pm024077 Prunus mume Pm024077 I 0.532
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.530
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.519
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.532
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.519
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.427
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.447
TCM_016416 Theobroma cacao TCM_016416 I 0.542
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.629
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.582
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.496