MTR_8g018100 (Medicago truncatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 MTR_8g018100 T331386_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AET01618 Sox 206 248

Links

Other Sox family TFs
Other Medicago truncatula TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29600.m000548 Ricinus communis 29600.m000548 I
29669.m000844 Ricinus communis 29669.m000844 I
29701.m000600 Ricinus communis 29701.m000600 I
30170.m014386 Ricinus communis 30170.m014386 I
AACERI_AaceriADL310W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADL310W I
AGOS_ADL310W Ashbya gossypii AGOS_ADL310W I
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.603
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.516
Bo1g006360 Brassica oleracea Bo1g006360 I
Bo5g030580 Brassica oleracea Bo5g030580 I
Bo7g014280 Brassica oleracea Bo7g014280 I
Bo7g061420 Brassica oleracea Bo7g061420 I
Bo7g101270 Brassica oleracea Bo7g101270 I
Bo7g117500 Brassica oleracea Bo7g117500 I
Bo8g070350 Brassica oleracea Bo8g070350 I
Bo8g081200 Brassica oleracea Bo8g081200 I
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I
Bra002073 Brassica rapa Bra002073 I
Bra011624 Brassica rapa Bra011624 I
Bra017723 Brassica rapa Bra017723 I
Bra025838 Brassica rapa Bra025838 I
Bra037266 Brassica rapa Bra037266 I
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.664
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I
Carubv10005973m.g Capsella rubella Carubv10005973m.g I
Carubv10010586m.g Capsella rubella Carubv10010586m.g I
Carubv10012681m.g Capsella rubella Carubv10012681m.g I
Carubv10014808m.g Capsella rubella Carubv10014808m.g I
Carubv10018109m.g Capsella rubella Carubv10018109m.g I
cassava17389.m1 Manihot esculenta cassava17389.m1 I
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I
cassava44923.m1 Manihot esculenta cassava44923.m1 I
Ca_04825 Cicer arietinum Ca_04825 I
Ca_05351 Cicer arietinum Ca_05351 I 0.453
Ca_09896 Cicer arietinum Ca_09896 I
Ca_10725 Cicer arietinum Ca_10725 I 0.418
Ca_19340 Cicer arietinum Ca_19340 I 0.424
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.453
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I
Cla009093 Citrullus lanatus Cla009093 I
Cla009222 Citrullus lanatus Cla009222 I
Cla018386 Citrullus lanatus Cla018386 I 0.424
Cla023817 Citrullus lanatus Cla023817 I
Cucsa.067200 Cucumis sativus Cucsa.067200 I
Cucsa.272190 Cucumis sativus Cucsa.272190 I
Cucsa.300030 Cucumis sativus Cucsa.300030 I
Cucsa.323100 Cucumis sativus Cucsa.323100 I
Ecym_7459 Eremothecium cymbalariae Ecym_7459 I
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.429
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.424
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.418
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.421
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I
F775_27510 Aegilops tauschii F775_27510 I 0.418
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.664
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.664
GLYMA04G01840 Glycine max GLYMA04G01840 I
GLYMA06G01970 Glycine max GLYMA06G01970 I
GLYMA09G33070 Glycine max GLYMA09G33070 I
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.423
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.582
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.453
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.560
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.418
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.418
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.526
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.567
GRMZM2G066528 Zea mays GRMZM2G066528 I
GRMZM2G162284 Zea mays GRMZM2G162284 I
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.664
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.424
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.424
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.424
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.424
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.424
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.429
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.429
HMG-1 Pisum sativum Q41026_PEA D
HMGB1 Arabidopsis thaliana AT3G51880 I
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.424
HMGB2 Arabidopsis thaliana AT1G20693 I
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I
HMGB3 Arabidopsis thaliana AT1G20696 I
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I
HMGB4 Arabidopsis thaliana AT2G17560 I
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I
HMGB5 Arabidopsis thaliana AT4G35570 I
HMGB6 Vitis vinifera VIT_10s0071g00870 I
Kpol_376p1 Vanderwaltozyma polyspora Kpol_376p1 I
Kwal_12539 Kluyveromyces waltii Kwal_12539 I
LALA0_S09e03686g Lachancea lanzarotensis LALA0_S09e03686g I
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.424
LPERR09G14820 Leersia perrieri LPERR09G14820 I
Lus10012252.g Linum usitatissimum Lus10012252.g I
Lus10016025.g Linum usitatissimum Lus10016025.g I
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.416
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.433
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.421
MDP0000205665 Malus domestica MDP0000205665 I
MDP0000275042 Malus domestica MDP0000275042 I
MDP0000301546 Malus domestica MDP0000301546 I
MDP0000362980 Malus domestica MDP0000362980 I
MDP0000607529 Malus domestica MDP0000607529 I
MDP0000757111 Malus domestica MDP0000757111 I
mgf000913m Mimulus guttatus mgf000913m I
mgf006113m Mimulus guttatus mgf006113m I
mgf008076m Mimulus guttatus mgf008076m I
mgf009330m Mimulus guttatus mgf009330m I
mgf014518m Mimulus guttatus mgf014518m I
mgf016363m Mimulus guttatus mgf016363m I 0.424
mgf016608m Mimulus guttatus mgf016608m I
MLOC_57633 Hordeum vulgare MLOC_57633 I
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.472
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.418
MPH_02795 Macrophomina phaseolina MPH_02795 I
MTR_1g022345 Medicago truncatula MTR_1g022345 I
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.482
MTR_3g115580 Medicago truncatula MTR_3g115580 I
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.418
MTR_7g068280 Medicago truncatula MTR_7g068280 I
MTR_8g073345 Medicago truncatula MTR_8g073345 I
NCLIV_043670 Neospora caninum NCLIV_043670 I
OB06G35870 Oryza brachyantha OB06G35870 I 0.424
OB09G25530 Oryza brachyantha OB09G25530 I
OBART06G28090 Oryza barthii OBART06G28090 I 0.424
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.424
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.424
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.424
OMERI09G14100 Oryza meridionalis OMERI09G14100 I
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.424
ONIVA09G20030 Oryza nivara ONIVA09G20030 I
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.424
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.577
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.592
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.615
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.424
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.424
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I
OS06G0728000 Oryza sativa OS06G0728000 I 0.424
OS09G0551600 Oryza sativa OS09G0551600 I
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.565
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.424
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.424
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.601
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I
PK03866.1 Cannabis sativa PK03866.1 I
PK11149.1 Cannabis sativa PK11149.1 I 0.424
PK14705.1 Cannabis sativa PK14705.1 I 0.525
PK29786.1 Cannabis sativa PK29786.1 I
Pm002934 Prunus mume Pm002934 I 0.424
Pm006054 Prunus mume Pm006054 I
Pm018913 Prunus mume Pm018913 I
Pm026798 Prunus mume Pm026798 I
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.424
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.543
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I
PV09_01265 Verruconis gallopava PV09_01265 I
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.616
Sb02g032140 Sorghum bicolor Sb02g032140 I
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.424
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.432
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.432
SEPMUDRAFT_150255 Sphaerulina musiva SEPMUDRAFT_150255 I
Si007288m.g Setaria italica Si007288m.g I 0.664
Si031512m.g Setaria italica Si031512m.g I
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I
TA04735 Theileria annulata TA04735 I
TBLA_0I02240 Tetrapisispora blattae TBLA_0I02240 I
TCM_000068 Theobroma cacao TCM_000068 I
TCM_007659 Theobroma cacao TCM_007659 I
TCM_021706 Theobroma cacao TCM_021706 I 0.418
TCM_034406 Theobroma cacao TCM_034406 I
TCM_042534 Theobroma cacao TCM_042534 I 0.618
TDEL_0C04750 Torulaspora delbrueckii TDEL_0C04750 I
TGME49_010410 Toxoplasma gondii TGME49_010410 I
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I
TP03_0469 Theileria parva TP03_0469 I
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.469
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.469
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.469
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.418
TRIUR3_27273 Triticum urartu TRIUR3_27273 I
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.469
UCRNP2_2405 Neofusicoccum parvum UCRNP2_2405 I
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.494
ZBAI_00368 Zygosaccharomyces bailii ZBAI_00368 I
ZBAI_05520 Zygosaccharomyces bailii ZBAI_05520 I
ZYRO0C15752g Zygosaccharomyces rouxii ZYRO0C15752g I