PGSC0003DMG400038366 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400038366 T004502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.719 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.719 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.719 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.719 0.860
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.693 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.693 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.693 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.693 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.693 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.693 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.683 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.683 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.683 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.678 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.678 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.678 0.820
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.678 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400088795 AP2 53 104

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12027 Aegilops tauschii F775_12027 N
F775_20405 Aegilops tauschii F775_20405 N
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N
BHLH110 Arabidopsis thaliana AT1G27660 N
BHLH112 Arabidopsis thaliana AT1G61660 N
BHLH154 Arabidopsis thaliana AT2G31730 N
BHLH123 Arabidopsis thaliana AT3G20640 N
AT4G05170 Arabidopsis thaliana AT4G05170 N
BHLH103 Arabidopsis thaliana AT4G21340 N
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N
Bo01052s010 Brassica oleracea Bo01052s010 N
Bo1g024090 Brassica oleracea Bo1g024090 N
Bo1g098400 Brassica oleracea Bo1g098400 N
Bo3g026410 Brassica oleracea Bo3g026410 N
Bo3g076150 Brassica oleracea Bo3g076150 N
Bo4g049510 Brassica oleracea Bo4g049510 N
Bo9g041010 Brassica oleracea Bo9g041010 N
Bo9g076250 Brassica oleracea Bo9g076250 N
Bra001798 Brassica rapa Bra001798 N
Bra005644 Brassica rapa Bra005644 N
Bra013520 Brassica rapa Bra013520 N
Bra027080 Brassica rapa Bra027080 N
Bra029562 Brassica rapa Bra029562 N
Bra031413 Brassica rapa Bra031413 N
Bra035761 Brassica rapa Bra035761 N
PK14284.1 Cannabis sativa PK14284.1 N
PK22680.1 Cannabis sativa PK22680.1 N
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N
Carubv10003683m.g Capsella rubella Carubv10003683m.g N
Carubv10006994m.g Capsella rubella Carubv10006994m.g N
Carubv10013632m.g Capsella rubella Carubv10013632m.g N
Carubv10020420m.g Capsella rubella Carubv10020420m.g N
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N
Ca_00214 Cicer arietinum Ca_00214 N
Ca_04928 Cicer arietinum Ca_04928 N
Ca_06936 Cicer arietinum Ca_06936 N
Ca_19891 Cicer arietinum Ca_19891 N
Cla003883 Citrullus lanatus Cla003883 N
Cla021101 Citrullus lanatus Cla021101 N
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N
Cucsa.059580 Cucumis sativus Cucsa.059580 N
Cucsa.125970 Cucumis sativus Cucsa.125970 N
Cucsa.342640 Cucumis sativus Cucsa.342640 N
Cucsa.359290 Cucumis sativus Cucsa.359290 N
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N
GLYMA06G40760 Glycine max GLYMA06G40760 N
GLYMA12G17630 Glycine max GLYMA12G17630 N
GLYMA12G34490 Glycine max GLYMA12G34490 N
GLYMA13G32320 Glycine max GLYMA13G32320 N
GLYMA13G36010 Glycine max GLYMA13G36010 N
GLYMA15G07010 Glycine max GLYMA15G07010 N
GLYMA16G24661 Glycine max GLYMA16G24661 N
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N
MLOC_37666 Hordeum vulgare MLOC_37666 N
MLOC_57076 Hordeum vulgare MLOC_57076 N
MLOC_72940 Hordeum vulgare MLOC_72940 N
LPERR01G28830 Leersia perrieri LPERR01G28830 N
Lus10007613.g Linum usitatissimum Lus10007613.g N
Lus10018400.g Linum usitatissimum Lus10018400.g N
Lus10025987.g Linum usitatissimum Lus10025987.g N
Lus10038550.g Linum usitatissimum Lus10038550.g N
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N
MDP0000168695 Malus domestica MDP0000168695 N
MDP0000262020 Malus domestica MDP0000262020 N
MDP0000295440 Malus domestica MDP0000295440 N
MDP0000296508 Malus domestica MDP0000296508 N
MDP0000301999 Malus domestica MDP0000301999 N
MDP0000687814 Malus domestica MDP0000687814 N
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N
cassava21180.m1 Manihot esculenta cassava21180.m1 N
cassava28105.m1 Manihot esculenta cassava28105.m1 N
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N
MTR_2g011070 Medicago truncatula MTR_2g011070 N
MTR_2g081820 Medicago truncatula MTR_2g081820 N
MTR_3g112170 Medicago truncatula MTR_3g112170 N
MTR_8g466800 Medicago truncatula MTR_8g466800 N
mgf001258m Mimulus guttatus mgf001258m N
mgf008488m Mimulus guttatus mgf008488m N
mgf013138m Mimulus guttatus mgf013138m N
mgf016565m Mimulus guttatus mgf016565m N
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N
OBART01G33360 Oryza barthii OBART01G33360 N
OBART04G24870 Oryza barthii OBART04G24870 N
OBART05G21860 Oryza barthii OBART05G21860 N
OB04G33270 Oryza brachyantha OB04G33270 N
OB05G29420 Oryza brachyantha OB05G29420 N
OB08G14900 Oryza brachyantha OB08G14900 N
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N
BGIOSGA000686 Oryza indica BGIOSGA000686 N
BGIOSGA017200 Oryza indica BGIOSGA017200 N
BGIOSGA020126 Oryza indica BGIOSGA020126 N
BGIOSGA020128 Oryza indica BGIOSGA020128 N
OLONG_006510 Oryza longistaminata OLONG_006510 N
OLONG_021979 Oryza longistaminata OLONG_021979 N
OLONG_026655 Oryza longistaminata OLONG_026655 N
OMERI01G30260 Oryza meridionalis OMERI01G30260 N
OMERI04G21930 Oryza meridionalis OMERI04G21930 N
OMERI12G12400 Oryza meridionalis OMERI12G12400 N
ONIVA01G38120 Oryza nivara ONIVA01G38120 N
ONIVA03G13290 Oryza nivara ONIVA03G13290 N
ONIVA05G22530 Oryza nivara ONIVA05G22530 N
OPUNC01G00360 Oryza punctata OPUNC01G00360 N
OPUNC01G32440 Oryza punctata OPUNC01G32440 N
OPUNC04G23980 Oryza punctata OPUNC04G23980 N
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N
OS04G0631600 Oryza sativa OS04G0631600 N
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N
Pavir.J10443 Panicum virgatum Pavir.J10443 N
Pavir.J13928 Panicum virgatum Pavir.J13928 N
Pavir.J25904 Panicum virgatum Pavir.J25904 N
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N
Pm005865 Prunus mume Pm005865 N
Pm007388 Prunus mume Pm007388 N
Pm009855 Prunus mume Pm009855 N
Pm011692 Prunus mume Pm011692 N
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N
27733.m000033 Ricinus communis 27733.m000033 N
28405.m000015 Ricinus communis 28405.m000015 N
29842.m003704 Ricinus communis 29842.m003704 N
30170.m014085 Ricinus communis 30170.m014085 N
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N
Si001796m.g Setaria italica Si001796m.g N
Si010139m.g Setaria italica Si010139m.g N
Si013853m.g Setaria italica Si013853m.g N
Si022548m.g Setaria italica Si022548m.g N
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N
Sb03g008830 Sorghum bicolor Sb03g008830 N
Sb03g036670 Sorghum bicolor Sb03g036670 N
Sb07g004980 Sorghum bicolor Sb07g004980 N
Sb09g024720 Sorghum bicolor Sb09g024720 N
TCM_019871 Theobroma cacao TCM_019871 N
TCM_030051 Theobroma cacao TCM_030051 N
TCM_031172 Theobroma cacao TCM_031172 N
TCM_034098 Theobroma cacao TCM_034098 N
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N
TRIUR3_00968 Triticum urartu TRIUR3_00968 N
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N
GRMZM2G004732 Zea mays GRMZM2G004732 N
GRMZM2G155217 Zea mays GRMZM2G155217 N
GRMZM2G313058 Zea mays GRMZM2G313058 N
GRMZM2G440529 Zea mays GRMZM2G440529 N