D917_06384 (Trichinella nativa)
AP-2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03299 (TF_AP-2) IPR013854 D917_06384 T011360_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfap2b
M00112_2.00 		Mus musculus
CCBSRGGSNW
WNSCCYSVGG		 PBM
Badis et al.(2009)
Tcfap2b_3988 		0.749 0.749
TFAP2B
M02753_2.00 		Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD		 SELEX
Jolma et al.(2013)
TFAP2B_1 		0.749 0.749
TFAP2B
M02754_2.00 		Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
TFAP2B_2 		0.749 0.749
TFAP2B
M02755_2.00 		Homo sapiens
WGCCCYBVRGGCD
HGCCYBVRGGGCW		 SELEX
Jolma et al.(2013)
TFAP2B_3 		0.749 0.749
TFAP2B
M04046_2.00 		Homo sapiens
NSCCBNVGGSN
NSCCBNVGGSN		 SELEX
Yin et al.(2017)
TFAP2B_eDBD_HT-SELEX 		0.749 0.749
TFAP2B
M08701_2.00 		Homo sapiens
GSCYGVGGRV
BYCCBCRGSC		 Misc
Kulakovskiy et al.(2013)
AP2B_HUMAN.H11MO.0.B 		0.749 0.749
Tfap2b
M08705_2.00 		Mus musculus
GSCYGVGGRV
BYCCBCRGSC		 Misc
Kulakovskiy et al.(2013)
AP2B_MOUSE.H11MO.0.B 		0.749 0.749
TFAP2B
M09750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2BETA_Q3 		0.749 0.749
TFAP2B
M04047_2.00 		Homo sapiens
NSCCYNRGGSD
HSCCYNRGGSN		 SELEX
Yin et al.(2017)
TFAP2B_eDBD_Methyl-HT-SELEX 		0.749 0.749
TFAP2E
M04050_2.00 		Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD		 SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_1 		0.738 0.738
TFAP2E
M04051_2.00 		Homo sapiens
NSCCBBVGGSCA
TGSCCBVVGGSN		 SELEX
Yin et al.(2017)
TFAP2E_FL_HT-SELEX_2 		0.738 0.738
TFAP2E
M04052_2.00 		Homo sapiens
HSCCYSRGGSD
HSCCYSRGGSD		 SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_1 		0.738 0.738
TFAP2E
M04053_2.00 		Homo sapiens
NSCCYNRGGGCR
YGCCCYNRGGSN		 SELEX
Yin et al.(2017)
TFAP2E_FL_Methyl-HT-SELEX_2 		0.738 0.738
Tfap2c
M00113_2.00 		Mus musculus
NSCCBBVGGS
SCCBVVGGSN		 PBM
Badis et al.(2009)
Tcfap2c_2912 		0.733 0.733
Tfap2e
M00114_2.00 		Mus musculus
NNGCCYBVGG
CCBVRGGCNN		 PBM
Badis et al.(2009)
Tcfap2e_3713 		0.733 0.733
Tfap2c
M08706_2.00 		Mus musculus
NNSCCYGRGGSNN
NNSCCYCRGGSNN		 Misc
Kulakovskiy et al.(2013)
AP2C_MOUSE.H11MO.0.A 		0.733 0.733
Tfap2a
M00111_2.00 		Mus musculus
HSCCBNVRGS
SCYBNVGGSD		 PBM
Badis et al.(2009)
Tcfap2a_2337 		0.728 0.728
TFAP2A
M02762_2.00 		Homo sapiens
HGCCYBVRGGSD
HSCCYBVRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_1 		0.728 0.728
TFAP2A
M02763_2.00 		Homo sapiens
HGCCYSMGGCN
NGCCKSRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_2 		0.728 0.728
TFAP2A
M02764_2.00 		Homo sapiens
NSCCCBNVRGGSN
NSCCYBNVGGGSN		 SELEX
Jolma et al.(2013)
TFAP2A_3 		0.728 0.728
TFAP2A
M02765_2.00 		Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_4 		0.728 0.728
TFAP2A
M02766_2.00 		Homo sapiens
HGCCYBVRGGCD
HGCCYBVRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_5 		0.728 0.728
TFAP2A
M02767_2.00 		Homo sapiens
WGCCCYNVGGGCD
HGCCCBNRGGGCW		 SELEX
Jolma et al.(2013)
TFAP2A_6 		0.728 0.728
TFAP2C
M02756_2.00 		Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD		 SELEX
Jolma et al.(2013)
TFAP2C_1 		0.728 0.728
TFAP2C
M02757_2.00 		Homo sapiens
HGCCTBRGGCD
HGCCYVAGGCD		 SELEX
Jolma et al.(2013)
TFAP2C_2 		0.728 0.728
TFAP2C
M02758_2.00 		Homo sapiens
WGCCCYNRGGGCD
HGCCCYNRGGGCW		 SELEX
Jolma et al.(2013)
TFAP2C_3 		0.728 0.728
TFAP2C
M02759_2.00 		Homo sapiens
HSCCYBVRGGCD
HGCCYBVRGGSD		 SELEX
Jolma et al.(2013)
TFAP2C_4 		0.728 0.728
TFAP2C
M02760_2.00 		Homo sapiens
NGCCCBNVRGGCN
NGCCYBNVGGGCN		 SELEX
Jolma et al.(2013)
TFAP2C_5 		0.728 0.728
TFAP2C
M02761_2.00 		Homo sapiens
HGCCTBRGGCD
HGCCYVAGGCD		 SELEX
Jolma et al.(2013)
TFAP2C_6 		0.728 0.728
Tfap2a
M02768_2.00 		Mus musculus
HGCCYBVRGGCR
YGCCYBVRGGCD		 SELEX
Jolma et al.(2013)
Tcfap2a_1 		0.728 0.728
Tfap2a
M02769_2.00 		Mus musculus
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
Tcfap2a_2 		0.728 0.728
Tfap2a
M02770_2.00 		Mus musculus
WGCCCYBVGGGCD
HGCCCBVRGGGCW		 SELEX
Jolma et al.(2013)
Tcfap2a_3 		0.728 0.728
TFAP2A
M04054_2.00 		Homo sapiens
NGCCBSVGGCN
NGCCBSVGGCN		 SELEX
Yin et al.(2017)
TFAP2A_FL_HT-SELEX 		0.728 0.728
TFAP2C
M04048_2.00 		Homo sapiens
NSCYHNHRGBN
NVCYDNDRGSN		 SELEX
Yin et al.(2017)
TFAP2C_eDBD_HT-SELEX 		0.728 0.728
TFAP2A
M07784_2.00 		Homo sapiens
NBNSCCYSRGGSCWN
NWGSCCYSRGGSNVN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2ALPHA_UCD 		0.728 0.728
TFAP2C
M07783_2.00 		Homo sapiens
NSCCYSRGGSCANDN
NHNTGSCCYSRGGSN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2GAMMA_UCD 		0.728 0.728
TFAP2A
M08703_2.00 		Homo sapiens
NHDSCCYCAGGSHWN
NWDSCCTGRGGSHDN		 Misc
Kulakovskiy et al.(2013)
AP2A_HUMAN.H11MO.0.A 		0.728 0.728
TFAP2C
M08702_2.00 		Homo sapiens
NDSCCYCAGGSHHN
NDDSCCTGRGGSHN		 Misc
Kulakovskiy et al.(2013)
AP2C_HUMAN.H11MO.0.A 		0.728 0.728
Tfap2a
M08704_2.00 		Mus musculus
SCCYCRGGSNNN
NNNSCCYGRGGS		 Misc
Kulakovskiy et al.(2013)
AP2A_MOUSE.H11MO.0.A 		0.728 0.728
TFAP2C
M09451_2.00 		Homo sapiens
SCCYSRGGSHNN
NNDSCCYSRGGS		 Misc
Heinz et al.(2010)
MCF7-TFAP2C_GSE21234 		0.728 0.728
TFAP2A
M09755_2.00 		Homo sapiens
GCCBBVVGS
SCBBVVGGC		 Transfac
Matys et al.(2006)
V$AP2ALPHA_01 		0.728 0.728
TFAP2A
M09756_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_02 		0.728 0.728
TFAP2A
M09757_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_03 		0.728 0.728
TFAP2A
M09758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_Q4 		0.728 0.728
TFAP2A
M09759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_Q6 		0.728 0.728
TFAP2C
M09751_2.00 		Homo sapiens
GCCBBVRGS
SCYBVVGGC		 Transfac
Matys et al.(2006)
V$AP2GAMMA_01 		0.728 0.728
TFAP2C
M09752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2GAMMA_Q4 		0.728 0.728
TFAP2C
M09753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2GAMMA_Q5_01 		0.728 0.728
TFAP2C
M09754_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2GAMMA_Q5 		0.728 0.728
TFAP2A
M09760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFAP2A_09 		0.728 0.728
TFAP2A
M04055_2.00 		Homo sapiens
NSCCTNAGGSN
NSCCTNAGGSN		 SELEX
Yin et al.(2017)
TFAP2A_FL_Methyl-HT-SELEX 		0.728 0.728
TFAP2C
M04049_2.00 		Homo sapiens
NSCCYNRGGSN
NSCCYNRGGSN		 SELEX
Yin et al.(2017)
TFAP2C_eDBD_Methyl-HT-SELEX 		0.728 0.728
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D917_06384 AP-2 271 473

Links

Other AP-2 family TFs
Other Trichinella nativa TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N
DUO1 Arabidopsis thaliana AT3G60460 N
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N
Bo6g077030 Brassica oleracea Bo6g077030 N
Bo8g095200 Brassica oleracea Bo8g095200 N
Bra003413 Brassica rapa Bra003413 N
Bra007536 Brassica rapa Bra007536 N
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N
Carubv10019483m.g Capsella rubella Carubv10019483m.g N
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N
Ca_18954 Cicer arietinum Ca_18954 N
Cla006831 Citrullus lanatus Cla006831 N
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N
Cucsa.121070 Cucumis sativus Cucsa.121070 N
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N
GLYMA03G26830 Glycine max GLYMA03G26830 N
GLYMA07G14480 Glycine max GLYMA07G14480 N
GLYMA09G00371 Glycine max GLYMA09G00371 N
GLYMA12G37026 Glycine max GLYMA12G37026 N
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N
LPERR04G16870 Leersia perrieri LPERR04G16870 N
Lus10009780.g Linum usitatissimum Lus10009780.g N
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N
MDP0000237596 Malus domestica MDP0000237596 N
MDP0000319634 Malus domestica MDP0000319634 N
cassava19913.m1 Manihot esculenta cassava19913.m1 N
cassava17368.m1 Manihot esculenta cassava17368.m1 N
MTR_8g006470 Medicago truncatula MTR_8g006470 N
MTR_4g029540 Medicago truncatula MTR_4g029540 N
mgf019330m Mimulus guttatus mgf019330m N
OBART04G20790 Oryza barthii OBART04G20790 N
OB08G27600 Oryza brachyantha OB08G27600 N
OB04G27810 Oryza brachyantha OB04G27810 N
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N
BGIOSGA016880 Oryza indica BGIOSGA016880 N
OMERI04G17240 Oryza meridionalis OMERI04G17240 N
ONIVA04G19030 Oryza nivara ONIVA04G19030 N
OPUNC04G18480 Oryza punctata OPUNC04G18480 N
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N
Pavir.J30013 Panicum virgatum Pavir.J30013 N
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N
Pavir.J35399 Panicum virgatum Pavir.J35399 N
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N
Pm031387 Prunus mume Pm031387 N
Pm019530 Prunus mume Pm019530 N
Pm017596 Prunus mume Pm017596 N
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N
30174.m008784 Ricinus communis 30174.m008784 N
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N
Si012032m.g Setaria italica Si012032m.g N
Si015815m.g Setaria italica Si015815m.g N
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N
Sb06g024510 Sorghum bicolor Sb06g024510 N
Sb07g027160 Sorghum bicolor Sb07g027160 N
TCM_005653 Theobroma cacao TCM_005653 N
TCM_014872 Theobroma cacao TCM_014872 N
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N
DUO1 Vitis vinifera VIT_15s0021g02040 N
GRMZM2G311059 Zea mays GRMZM2G311059 N
GRMZM2G105137 Zea mays GRMZM2G105137 N
GRMZM2G046443 Zea mays GRMZM2G046443 N