estExt_fgenesh1_pg.C_10228 (Coccomyxa subellipsoidea C169)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 estExt_fgenesh1_pg.C_10228 T016086_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.486 0.435
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.485 0.353
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.468 0.424
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.462 0.412
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.462 0.412
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.462 0.412
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.462 0.412
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.462 0.412
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.462 0.412
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.462 0.412
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.462 0.365
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.448 0.447
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.448 0.400
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.448 0.400
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.448 0.400
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.448 0.400
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
45820 ARID/BRIGHT 35 120

Links

Other ARID/BRIGHT family TFs
Other Coccomyxa subellipsoidea C169 TFs

357 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I
ANCCAN_09370 Ancylostoma caninum ANCCAN_09370 N
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I
ASIM_0000041701 Anisakis simplex ASIM_0000041701 N
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I
ASU_01199 Ascaris suum ASU_01199 I
ASU_04305 Ascaris suum ASU_04305 I
ASU_10946 Ascaris suum ASU_10946 I
Bm12053 Brugia malayi Bm12053 I
Bm14724 Brugia malayi Bm14724 I
Bm2389 Brugia malayi Bm2389 I
Bm4894 Brugia malayi Bm4894 I
BTMF_0000273701 Brugia timori BTMF_0000273701 I
BTMF_0001198801 Brugia timori BTMF_0001198801 I
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I
BXY_0179600 Bursaphelenchus xylophilus BXY_0179600 I
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I
CBN08571 Caenorhabditis brenneri CBN08571 I
CBN10811 Caenorhabditis brenneri CBN10811 I
CBN13729 Caenorhabditis brenneri CBN13729 I
CBN18797 Caenorhabditis brenneri CBN18797 I
CBN19233 Caenorhabditis brenneri CBN19233 I
CBN20828 Caenorhabditis brenneri CBN20828 I
CBN26258 Caenorhabditis brenneri CBN26258 I
CBN31048 Caenorhabditis brenneri CBN31048 I
CBG01439 Caenorhabditis briggsae CBG01439 N
CBG06052 Caenorhabditis briggsae CBG06052 I
CBG07552 Caenorhabditis briggsae CBG07552 I
CBG15006 Caenorhabditis briggsae CBG15006 I
CBG17744 Caenorhabditis briggsae CBG17744 I
CBG19594 Caenorhabditis briggsae CBG19594 I
CBG19604 Caenorhabditis briggsae CBG19604 I
nhr-3 Caenorhabditis elegans WBGene00003602 D
nhr-7 Caenorhabditis elegans WBGene00003606 D
nhr-31 Caenorhabditis elegans WBGene00003625 I
nhr-88 Caenorhabditis elegans WBGene00003678 I
nhr-97 Caenorhabditis elegans WBGene00003687 N
nhr-119 Caenorhabditis elegans WBGene00003709 I
CJA03362 Caenorhabditis japonica CJA03362 N
CJA04720 Caenorhabditis japonica CJA04720 I
CJA08328 Caenorhabditis japonica CJA08328 I
CJA13646 Caenorhabditis japonica CJA13646 I
CRE02711 Caenorhabditis remanei CRE02711 I
CRE06661 Caenorhabditis remanei CRE06661 I
CRE06667 Caenorhabditis remanei CRE06667 I
CRE09911 Caenorhabditis remanei CRE09911 I
CRE10161 Caenorhabditis remanei CRE10161 I
CRE12779 Caenorhabditis remanei CRE12779 I
CRE14116 Caenorhabditis remanei CRE14116 I
CRE15289 Caenorhabditis remanei CRE15289 I
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I
DME_0000188101 Dracunculus medinensis DME_0000188101 I
DME_0000742401 Dracunculus medinensis DME_0000742401 I
DME_0000960901 Dracunculus medinensis DME_0000960901 I
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I
GPLIN_000268400 Globodera pallida GPLIN_000268400 I
GPLIN_000669000 Globodera pallida GPLIN_000669000 I
GPLIN_001106000 Globodera pallida GPLIN_001106000 I
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I
HCOI00435200 Haemonchus contortus HCOI00435200 I
HCOI00769300 Haemonchus contortus HCOI00769300 I
HCOI00878400 Haemonchus contortus HCOI00878400 N
HCOI01268300 Haemonchus contortus HCOI01268300 I
HCOI01406200 Haemonchus contortus HCOI01406200 I
HCOI01716000 Haemonchus contortus HCOI01716000 I
HCOI02063000 Haemonchus contortus HCOI02063000 N
HCOI02063200 Haemonchus contortus HCOI02063200 N
HCOI02063400 Haemonchus contortus HCOI02063400 N
HCOI02063800 Haemonchus contortus HCOI02063800 N
HCOI02064100 Haemonchus contortus HCOI02064100 N
HCOI02077900 Haemonchus contortus HCOI02077900 I
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I
LOAG_01074 Loa loa LOAG_01074 I
LOAG_05485 Loa loa LOAG_05485 I
LOAG_18352 Loa loa LOAG_18352 I
augustus_masked-nMf.1.1.scaf06891-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06891-processed-gene-0.0 N
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I
Minc01725 Meloidogyne incognita Minc01725 I
Minc13525 Meloidogyne incognita Minc13525 I
Minc15420 Meloidogyne incognita Minc15420 I
NECAME_04545 Necator americanus NECAME_04545 I
NECAME_05125 Necator americanus NECAME_05125 I
NECAME_12696 Necator americanus NECAME_12696 I
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I
nOo.2.0.1.g02048 Onchocerca ochengi nOo.2.0.1.g02048 N
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I
WBGene00241236 Onchocerca volvulus WBGene00241236 I
WBGene00241910 Onchocerca volvulus WBGene00241910 I
WBGene00248075 Onchocerca volvulus WBGene00248075 I
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I
PTRK_0000785300 Parastrongyloides trichosuri PTRK_0000785300 I
ENSPFOG00000001827 Poecilia formosa ENSPFOG00000001827 I
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I
PPA20304 Pristionchus pacificus PPA20304 I
PPA21285 Pristionchus pacificus PPA21285 I
Ppa-nhr-31 Pristionchus pacificus PPA24219 I
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I
RSKR_0000862400 Rhabditophanes kr3021 RSKR_0000862400 N
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N
nRc.2.0.1.g00257 Romanomermis culicivorax nRc.2.0.1.g00257 I
SBAD_0000391501 Soboliphyme baturini SBAD_0000391501 I
L596_g11035 Steinernema carpocapsae L596_g11035 I
L596_g20569 Steinernema carpocapsae L596_g20569 I
L596_g25297 Steinernema carpocapsae L596_g25297 I
L596_g25666 Steinernema carpocapsae L596_g25666 I
L596_g27086 Steinernema carpocapsae L596_g27086 I
L596_g27130 Steinernema carpocapsae L596_g27130 I
L596_g3809 Steinernema carpocapsae L596_g3809 I
L889_g29204 Steinernema feltiae L889_g29204 I
L889_g5777 Steinernema feltiae L889_g5777 I
L889_g8361 Steinernema feltiae L889_g8361 I
L889_g8621 Steinernema feltiae L889_g8621 I
L893_g13285 Steinernema glaseri L893_g13285 I
L893_g27201 Steinernema glaseri L893_g27201 I
L893_g29388 Steinernema glaseri L893_g29388 I
L893_g29555 Steinernema glaseri L893_g29555 I
L893_g6878 Steinernema glaseri L893_g6878 I
L898_g10316 Steinernema monticolum L898_g10316 I
L898_g24498 Steinernema monticolum L898_g24498 I
L898_g2799 Steinernema monticolum L898_g2799 I
L898_g4801 Steinernema monticolum L898_g4801 I
L892_g19201 Steinernema scapterisci L892_g19201 I
L892_g650 Steinernema scapterisci L892_g650 I
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I
SPAL_0001690000 Strongyloides papillosus SPAL_0001690000 I
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I
SSTP_0000433200 Strongyloides stercoralis SSTP_0000433200 I
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I
SVE_0662100 Strongyloides venezuelensis SVE_0662100 I
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I
SMUV_0000212501 Syphacia muris SMUV_0000212501 I
SMUV_0000428701 Syphacia muris SMUV_0000428701 I
SMUV_0000859101 Syphacia muris SMUV_0000859101 I
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I
TCNE_0000088101 Toxocara canis TCNE_0000088101 N
TCNE_0001780601 Toxocara canis TCNE_0001780601 I
D917_06779 Trichinella nativa D917_06779 I
EFV54558 Trichinella spiralis EFV54558 I
TMUE_s0002006800 Trichuris muris TMUE_s0002006800 I
WUBG_08518 Wuchereria bancrofti WUBG_08518 I
WUBG_10752 Wuchereria bancrofti WUBG_10752 I