PRDM6 (Anolis carolinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSACAG00000003401 T085884_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM6
M08277_2.00 		Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA		 ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME 		0.827 1.000
PRDM6
M08855_2.00 		Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN		 Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000003308 C2H2 ZF 473 494
ENSACAP00000003308 C2H2 ZF 514 536
ENSACAP00000003308 C2H2 ZF 542 564
ENSACAP00000003308 C2H2 ZF 570 591

Links

Other C2H2 ZF family TFs
Other Anolis carolinensis TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I
F775_32062 Aegilops tauschii F775_32062 I
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I
DREB2G Arabidopsis thaliana AT5G18450 D
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I
Bo4g190040 Brassica oleracea Bo4g190040 I
Bo9g155940 Brassica oleracea Bo9g155940 I
Bo9g177130 Brassica oleracea Bo9g177130 I
Bra002159 Brassica rapa Bra002159 I
Bra017011 Brassica rapa Bra017011 I
PK07402.1 Cannabis sativa PK07402.1 D
PK07829.1 Cannabis sativa PK07829.1 I
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I
Carubv10002425m.g Capsella rubella Carubv10002425m.g I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I
Cla006713 Citrullus lanatus Cla006713 I
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I
Cucsa.136780 Cucumis sativus Cucsa.136780 I
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
GLYMA06G45680 Glycine max GLYMA06G45680 I
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I
MLOC_66686 Hordeum vulgare MLOC_66686 I
LPERR01G03760 Leersia perrieri LPERR01G03760 I
LPERR03G04860 Leersia perrieri LPERR03G04860 I
Lus10003581.g Linum usitatissimum Lus10003581.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000153866 Malus domestica MDP0000153866 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000290585 Malus domestica MDP0000290585 I
MDP0000446783 Malus domestica MDP0000446783 I
MDP0000703626 Malus domestica MDP0000703626 I
MDP0000871361 Malus domestica MDP0000871361 I
MDP0000880312 Malus domestica MDP0000880312 I
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I
MTR_5g083330 Medicago truncatula MTR_5g083330 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
mgf017629m Mimulus guttatus mgf017629m I
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
OBART01G04210 Oryza barthii OBART01G04210 I
OB01G13930 Oryza brachyantha OB01G13930 I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
DREB2A Oryza sativa OS01G0165000 I
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I
Pavir.J37967 Panicum virgatum Pavir.J37967 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
Pm015262 Prunus mume Pm015262 I
Pm018989 Prunus mume Pm018989 I
Pm025865 Prunus mume Pm025865 I
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I
29729.m002292 Ricinus communis 29729.m002292 I
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
Si002067m.g Setaria italica Si002067m.g I
Si022619m.g Setaria italica Si022619m.g I
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
Sb03g004980 Sorghum bicolor Sb03g004980 I
Sb09g016150 Sorghum bicolor Sb09g016150 I
TCM_043275 Theobroma cacao TCM_043275 I
TCM_043302 Theobroma cacao TCM_043302 I
TCM_043306 Theobroma cacao TCM_043306 I
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I
TRIUR3_17409 Triticum urartu TRIUR3_17409 I
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I
GRMZM2G006745 Zea mays GRMZM2G006745 I
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D