SNAI1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000000518 T089191_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.827 1.000
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.827 1.000
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.827 1.000
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.827 1.000
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.827 1.000
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.827 1.000
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.827 1.000
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.822 0.967
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.822 0.967
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000000885 C2H2 ZF 153 175
ENSCJAP00000000885 C2H2 ZF 179 201
ENSCJAP00000000885 C2H2 ZF 207 229
ENSCJAP00000000885 C2H2 ZF 235 256

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FAR1 Arabidopsis thaliana AT4G15090 D
Bostr.0597s0142 Boechera stricta Bostr.0597s0142 I
Bo6g054750 Brassica oleracea Bo6g054750 I
Bra040696 Brassica rapa Bra040696 I
PK04639.1 Cannabis sativa PK04639.1 I
Cagra.1850s0019 Capsella grandiflora Cagra.1850s0019 I
Carubv10012703m.g Capsella rubella Carubv10012703m.g I
Cucsa.180090 Cucumis sativus Cucsa.180090 I
Cucsa.180080 Cucumis sativus Cucsa.180080 I
Eucgr.C04090 Eucalyptus grandis Eucgr.C04090 I
Thhalv10024410m.g Eutrema salsugineum Thhalv10024410m.g I
gene24215-v1.0-hybrid Fragaria vesca gene24215-v1.0-hybrid I
GLYMA04G14850 Glycine max GLYMA04G14850 I
GLYMA10G40510 Glycine max GLYMA10G40510 I
GLYMA06G47210 Glycine max GLYMA06G47210 I
GLYMA20G26810 Glycine max GLYMA20G26810 I
Gorai.007G173400 Gossypium raimondii Gorai.007G173400 I
cassava24584.valid.m1 Manihot esculenta cassava24584.valid.m1 I
mgf008053m Mimulus guttatus mgf008053m I
POPTR_0006s02140 Populus trichocarpa POPTR_0006s02140 I
Pm014858 Prunus mume Pm014858 I
PRUPE_ppa001511mg Prunus persica PRUPE_ppa001511mg I
30106.m000672 Ricinus communis 30106.m000672 I
SapurV1A.0767s0090 Salix purpurea SapurV1A.0767s0090 I
SapurV1A.0767s0100 Salix purpurea SapurV1A.0767s0100 I
Solyc08g060840.1 Solanum lycopersicum Solyc08g060840.1 I
Solyc07g043270.2 Solanum lycopersicum Solyc07g043270.2 I
TCM_013043 Theobroma cacao TCM_013043 I
TCM_002030 Theobroma cacao TCM_002030 I
FAR1 Vitis vinifera VIT_03s0017g01810 I