PK25011.1 (Cannabis sativa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PK25011.1 T230122_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00		 Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01253_2.00 Homeodomain 39 95

DNA Binding Domains

Protein ID Domain From To Sequence
PK25011.1 Homeodomain 39 95

Links

Other Homeodomain family TFs
Other Cannabis sativa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.610
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.679
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.817
Bo9g006450 Brassica oleracea Bo9g006450 I 0.674
Bra034196 Brassica rapa Bra034196 I 0.674
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.679
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.679
Ca_21400 Cicer arietinum Ca_21400 I 0.601
Cla008712 Citrullus lanatus Cla008712 I 0.682
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.763
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.763
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.668
Eucgr.J00701 Eucalyptus grandis Eucgr.J00701 I 0.729
Thhalv10028592m.g Eutrema salsugineum Thhalv10028592m.g I 0.632
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.670
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.670
GLYMA08G41330 Glycine max GLYMA08G41330 I 0.780
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.670
GLYMA18G14910 Glycine max GLYMA18G14910 I 0.780
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.654
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.643
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.628
MDP0000207866 Malus domestica MDP0000207866 I 0.681
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.621
MTR_3g045830 Medicago truncatula MTR_3g045830 I 0.637
mgf000172m Mimulus guttatus mgf000172m I 0.601
mgf007720m Mimulus guttatus mgf007720m I 0.665
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.617
PDK_20s1402391g002 Phoenix dactylifera PDK_20s1402391g002 I 0.605
fgenesh1_pg.scaffold_15000027 Physcomitrella patens fgenesh1_pg.scaffold_15000027 I 0.625
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.645
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.657
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.679
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.626
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.656
Solyc12g099760.1 Solanum lycopersicum Solyc12g099760.1 I 0.612
Solyc11g065110.1 Solanum lycopersicum Solyc11g065110.1 I 0.604
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.625
TCM_040945 Theobroma cacao TCM_040945 I 0.668
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.825