Thhalv10019810m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019810m.g T259166_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019810m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
Ca_06682 Cicer arietinum Ca_06682 N 0.000
Ca_19192 Cicer arietinum Ca_19192 N 0.000
Cla012423 Citrullus lanatus Cla012423 N 0.000
Cla012920 Citrullus lanatus Cla012920 N 0.000
Cla016961 Citrullus lanatus Cla016961 N 0.000
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.000
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N 0.000
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.000
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.000
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.000
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.000
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.000
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N 0.000
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N 0.000
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.000
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.000
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.000
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.000
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
MDP0000462461 Malus domestica MDP0000462461 N 0.000
MDP0000375866 Malus domestica MDP0000375866 N 0.000
MDP0000301302 Malus domestica MDP0000301302 N 0.000
MDP0000248422 Malus domestica MDP0000248422 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
cassava5958.m1 Manihot esculenta cassava5958.m1 N 0.000
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.000
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.000
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N 0.000
MTR_4g114785 Medicago truncatula MTR_4g114785 N 0.000
MTR_4g114770 Medicago truncatula MTR_4g114770 N 0.000
MTR_0339s0010 Medicago truncatula MTR_0339s0010 N 0.000
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.000
GSMUA_Achr2G12870_001 Musa acuminata GSMUA_Achr2G12870_001 N 0.000
OBART12G19140 Oryza barthii OBART12G19140 N 0.000
OB12G26010 Oryza brachyantha OB12G26010 N 0.000
ORGLA12G0164400 Oryza glaberrima ORGLA12G0164400 N 0.000
OGLUM12G20810 Oryza glumaepatula OGLUM12G20810 N 0.000
BGIOSGA035814 Oryza indica BGIOSGA035814 N 0.000
OMERI12G13490 Oryza meridionalis OMERI12G13490 N 0.000
ONIVA02G25900 Oryza nivara ONIVA02G25900 N 0.000
OPUNC12G17310 Oryza punctata OPUNC12G17310 N 0.000
ORUFI12G21360 Oryza rufipogon ORUFI12G21360 N 0.000
OS12G0620400 Oryza sativa OS12G0620400 N 0.000
Pavir.Ia01134 Panicum virgatum Pavir.Ia01134 N 0.000
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.000
Pavir.J29994 Panicum virgatum Pavir.J29994 N 0.000
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
Pm013666 Prunus mume Pm013666 N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.000
29841.m002855 Ricinus communis 29841.m002855 N 0.000
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.000
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.000
Si035862m.g Setaria italica Si035862m.g N 0.000
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.000
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.000
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.000
TCM_038107 Theobroma cacao TCM_038107 N 0.000
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.000
GRMZM2G022365 Zea mays GRMZM2G022365 N 0.000