Pavir.Ea03682 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ea03682 T289143_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.857 0.914
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.857 0.914
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.813 0.871
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.664 0.742
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.663 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03682.1.p Myb 14 61
Pavir.Ea03682.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

559 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14744 Aegilops tauschii F775_14744 I
F775_18231 Aegilops tauschii F775_18231 I
F775_20725 Aegilops tauschii F775_20725 I
F775_30010 Aegilops tauschii F775_30010 I
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I
Aquca_030_00245 Aquilegia coerulea Aquca_030_00245 N
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I
MYB58 Arabidopsis thaliana AT1G16490 D
AtMYB50 Arabidopsis thaliana AT1G57560 I
ATMYB63 Arabidopsis thaliana AT1G79180 D
MYB14 Arabidopsis thaliana AT2G31180 I
MYB55 Arabidopsis thaliana AT4G01680 D
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I
BRADI3G28830 Brachypodium distachyon BRADI3G28830 I
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I
Bo3g081700 Brassica oleracea Bo3g081700 I
Bo4g176020 Brassica oleracea Bo4g176020 I
Bo4g176030 Brassica oleracea Bo4g176030 I
Bo6g077600 Brassica oleracea Bo6g077600 I
Bo6g081140 Brassica oleracea Bo6g081140 I
Bo6g122640 Brassica oleracea Bo6g122640 I
Bo7g040780 Brassica oleracea Bo7g040780 I
Bo8g105490 Brassica oleracea Bo8g105490 I
Bo9g004210 Brassica oleracea Bo9g004210 I
Bra001907 Brassica rapa Bra001907 I
Bra003619 Brassica rapa Bra003619 I
Bra014929 Brassica rapa Bra014929 I
Bra018267 Brassica rapa Bra018267 I
Bra021708 Brassica rapa Bra021708 I
Bra026720 Brassica rapa Bra026720 I
Bra036317 Brassica rapa Bra036317 I
PK03488.1 Cannabis sativa PK03488.1 I
PK08038.1 Cannabis sativa PK08038.1 I
PK20358.1 Cannabis sativa PK20358.1 I
PK29337.1 Cannabis sativa PK29337.1 I
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I
Carubv10001308m.g Capsella rubella Carubv10001308m.g I
Carubv10011190m.g Capsella rubella Carubv10011190m.g I
Carubv10015750m.g Capsella rubella Carubv10015750m.g I
Carubv10020691m.g Capsella rubella Carubv10020691m.g I
Carubv10020714m.g Capsella rubella Carubv10020714m.g I
Carubv10023905m.g Capsella rubella Carubv10023905m.g I
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I
Ca_03589 Cicer arietinum Ca_03589 I
Ca_12130 Cicer arietinum Ca_12130 I
Cla006077 Citrullus lanatus Cla006077 I
Cla013211 Citrullus lanatus Cla013211 I
Cla019747 Citrullus lanatus Cla019747 I
Cla021845 Citrullus lanatus Cla021845 I
Ciclev10005629m.g Citrus clementina Ciclev10005629m.g I
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I
Ciclev10017435m.g Citrus clementina Ciclev10017435m.g I
Ciclev10017677m.g Citrus clementina Ciclev10017677m.g I
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I
Ciclev10018311m.g Citrus clementina Ciclev10018311m.g I
Ciclev10020765m.g Citrus clementina Ciclev10020765m.g I
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I
orange1.1g024484m.g Citrus sinensis orange1.1g024484m.g I
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N
orange1.1g039198m.g Citrus sinensis orange1.1g039198m.g I
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I
Cucsa.053600 Cucumis sativus Cucsa.053600 I
Cucsa.126220 Cucumis sativus Cucsa.126220 I
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.682
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I
gene01997-v1.0-hybrid Fragaria vesca gene01997-v1.0-hybrid I
gene08084-v1.0-hybrid Fragaria vesca gene08084-v1.0-hybrid I
gene11462-v1.0-hybrid Fragaria vesca gene11462-v1.0-hybrid I
GLYMA01G06192 Glycine max GLYMA01G06192 I
GLYMA02G00820 Glycine max GLYMA02G00820 I
GLYMA02G12254 Glycine max GLYMA02G12254 I
GLYMA03G31980 Glycine max GLYMA03G31980 I
GLYMA06G45531 Glycine max GLYMA06G45531 N
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA06G45570 Glycine max GLYMA06G45570 I
GLYMA08G17861 Glycine max GLYMA08G17861 I
GLYMA10G00930 Glycine max GLYMA10G00930 I
GLYMA10G32410 Glycine max GLYMA10G32410 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA12G32530 Glycine max GLYMA12G32530 I
GLYMA13G37903 Glycine max GLYMA13G37903 I
GLYMA15G41255 Glycine max GLYMA15G41255 I
GLYMA20G35180 Glycine max GLYMA20G35180 I
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I
Gorai.003G183700 Gossypium raimondii Gorai.003G183700 I
Gorai.004G183500 Gossypium raimondii Gorai.004G183500 I
Gorai.004G183600 Gossypium raimondii Gorai.004G183600 I
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Gorai.013G073000 Gossypium raimondii Gorai.013G073000 N
MLOC_53640 Hordeum vulgare MLOC_53640 I
MLOC_71418 Hordeum vulgare MLOC_71418 I
LPERR02G23410 Leersia perrieri LPERR02G23410 I
Lus10003557.g Linum usitatissimum Lus10003557.g I
Lus10011820.g Linum usitatissimum Lus10011820.g I
Lus10018518.g Linum usitatissimum Lus10018518.g N
Lus10021185.g Linum usitatissimum Lus10021185.g I
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10031758.g Linum usitatissimum Lus10031758.g I
Lus10033737.g Linum usitatissimum Lus10033737.g N
Lus10033889.g Linum usitatissimum Lus10033889.g I
Lus10042561.g Linum usitatissimum Lus10042561.g I
chr1.CM0295.20.nd Lotus japonicus chr1.CM0295.20.nd I
chr5.CM0071.410.nd Lotus japonicus chr5.CM0071.410.nd I
chr6.CM1613.30.nc Lotus japonicus chr6.CM1613.30.nc I
LjSGA_022617.1 Lotus japonicus LjSGA_022617.1 I
MDP0000145050 Malus domestica MDP0000145050 I
MDP0000148689 Malus domestica MDP0000148689 N
MDP0000155426 Malus domestica MDP0000155426 I
MDP0000215675 Malus domestica MDP0000215675 I
MDP0000230141 Malus domestica MDP0000230141 I
MDP0000407613 Malus domestica MDP0000407613 N
MDP0000435315 Malus domestica MDP0000435315 I
MDP0000897594 Malus domestica MDP0000897594 I
cassava14699.m1 Manihot esculenta cassava14699.m1 I
cassava26895.m1 Manihot esculenta cassava26895.m1 N
cassava35427.valid.m1 Manihot esculenta cassava35427.valid.m1 I
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I
cassava47180.m1 Manihot esculenta cassava47180.m1 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
MTR_0063s0090 Medicago truncatula MTR_0063s0090 N
MTR_1g043050 Medicago truncatula MTR_1g043050 I
MTR_1g043080 Medicago truncatula MTR_1g043080 I
MTR_1g076150 Medicago truncatula MTR_1g076150 I
MTR_1g085040 Medicago truncatula MTR_1g085040 I
MTR_7g111290 Medicago truncatula MTR_7g111290 I
mgf011672m Mimulus guttatus mgf011672m I
mgf019234m Mimulus guttatus mgf019234m N
GSMUA_Achr10G24560_001 Musa acuminata GSMUA_Achr10G24560_001 I
GSMUA_Achr11G00410_001 Musa acuminata GSMUA_Achr11G00410_001 I
GSMUA_Achr11G23500_001 Musa acuminata GSMUA_Achr11G23500_001 N
GSMUA_Achr1G09180_001 Musa acuminata GSMUA_Achr1G09180_001 I
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I
GSMUA_Achr2G18090_001 Musa acuminata GSMUA_Achr2G18090_001 I
GSMUA_Achr4G19030_001 Musa acuminata GSMUA_Achr4G19030_001 I
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I
GSMUA_Achr4G27350_001 Musa acuminata GSMUA_Achr4G27350_001 I
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I
GSMUA_Achr5G03520_001 Musa acuminata GSMUA_Achr5G03520_001 I
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I
GSMUA_AchrUn_randomG02890_001 Musa acuminata GSMUA_AchrUn_randomG02890_001 I
GSMUA_AchrUn_randomG07900_001 Musa acuminata GSMUA_AchrUn_randomG07900_001 I
OBART02G28790 Oryza barthii OBART02G28790 I
OBART04G23680 Oryza barthii OBART04G23680 I
OB0039G10010 Oryza brachyantha OB0039G10010 I
OB02G35920 Oryza brachyantha OB02G35920 I
OB04G30570 Oryza brachyantha OB04G30570 I
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I
BGIOSGA005798 Oryza indica BGIOSGA005798 I
BGIOSGA014440 Oryza indica BGIOSGA014440 I
BGIOSGA031688 Oryza indica BGIOSGA031688 I
OLONG_022853 Oryza longistaminata OLONG_022853 I
OMERI02G27850 Oryza meridionalis OMERI02G27850 I
OMERI04G19570 Oryza meridionalis OMERI04G19570 I
ONIVA02G31530 Oryza nivara ONIVA02G31530 I
ONIVA04G19740 Oryza nivara ONIVA04G19740 I
OPUNC02G26430 Oryza punctata OPUNC02G26430 I
OPUNC04G21230 Oryza punctata OPUNC04G21230 I
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I
ORUFI10G14060 Oryza rufipogon ORUFI10G14060 I
OS02G0695200 Oryza sativa OS02G0695200 I
OS04G0594100 Oryza sativa OS04G0594100 I
OS10G0478300 Oryza sativa OS10G0478300 I
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I
Pavir.Ga00752 Panicum virgatum Pavir.Ga00752 I
Pavir.Gb00587 Panicum virgatum Pavir.Gb00587 I
Pavir.Ia01684 Panicum virgatum Pavir.Ia01684 I
Pavir.J09313 Panicum virgatum Pavir.J09313 I
Pavir.J10932 Panicum virgatum Pavir.J10932 I
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
POPTR_0019s03490 Populus trichocarpa POPTR_0019s03490 I
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
POPTR_0019s14130 Populus trichocarpa POPTR_0019s14130 N
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
Pm009364 Prunus mume Pm009364 I
Pm015303 Prunus mume Pm015303 I
Pm015547 Prunus mume Pm015547 I
Pm020596 Prunus mume Pm020596 I
Pm030488 Prunus mume Pm030488 I
PRUPE_ppa017235mg Prunus persica PRUPE_ppa017235mg I
PRUPE_ppa020190mg Prunus persica PRUPE_ppa020190mg I
PRUPE_ppa021921mg Prunus persica PRUPE_ppa021921mg I
PRUPE_ppa025095mg Prunus persica PRUPE_ppa025095mg I
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I
SapurV1A.0264s0440 Salix purpurea SapurV1A.0264s0440 I
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I
SELMODRAFT_38058 Selaginella moellendorffii SELMODRAFT_38058 I
Si010384m.g Setaria italica Si010384m.g I
Si017704m.g Setaria italica Si017704m.g I
Si040527m.g Setaria italica Si040527m.g I
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I
Solyc03g093890.2 Solanum lycopersicum Solyc03g093890.2 N
Solyc03g093930.2 Solanum lycopersicum Solyc03g093930.2 N
Solyc05g008250.1 Solanum lycopersicum Solyc05g008250.1 I 0.776
Solyc05g055030.1 Solanum lycopersicum Solyc05g055030.1 I
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I
Solyc06g083900.2 Solanum lycopersicum Solyc06g083900.2 I
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I
Solyc07g053240.2 Solanum lycopersicum Solyc07g053240.2 I
Solyc07g054960.1 Solanum lycopersicum Solyc07g054960.1 I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N
PGSC0003DMG400008337 Solanum tuberosum PGSC0003DMG400008337 N
PGSC0003DMG400011243 Solanum tuberosum PGSC0003DMG400011243 I
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N
PGSC0003DMG400015087 Solanum tuberosum PGSC0003DMG400015087 N
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I
PGSC0003DMG400020071 Solanum tuberosum PGSC0003DMG400020071 I
PGSC0003DMG400023405 Solanum tuberosum PGSC0003DMG400023405 I
PGSC0003DMG400026176 Solanum tuberosum PGSC0003DMG400026176 N
PGSC0003DMG400030548 Solanum tuberosum PGSC0003DMG400030548 I 0.772
PGSC0003DMG400042926 Solanum tuberosum PGSC0003DMG400042926 N
PGSC0003DMG400046667 Solanum tuberosum PGSC0003DMG400046667 N
PGSC0003DMG400047175 Solanum tuberosum PGSC0003DMG400047175 N
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I
Sb01g019270 Sorghum bicolor Sb01g019270 I
Sb04g031110 Sorghum bicolor Sb04g031110 I
Sb06g027180 Sorghum bicolor Sb06g027180 I
TCM_004046 Theobroma cacao TCM_004046 I
TCM_007865 Theobroma cacao TCM_007865 I
TCM_007868 Theobroma cacao TCM_007868 I
TCM_020889 Theobroma cacao TCM_020889 I
TCM_026197 Theobroma cacao TCM_026197 I
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I
Traes_6AL_C13753B31 Triticum aestivum Traes_6AL_C13753B31 I
Traes_6DL_8BAAC240D Triticum aestivum Traes_6DL_8BAAC240D I
TRIUR3_14330 Triticum urartu TRIUR3_14330 I
TRIUR3_18702 Triticum urartu TRIUR3_18702 I
TRIUR3_31731 Triticum urartu TRIUR3_31731 I
VIT_05s0049g01010 Vitis vinifera VIT_05s0049g01010 I
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I
GRMZM2G038722 Zea mays GRMZM2G038722 I
GRMZM2G097636 Zea mays GRMZM2G097636 I
GRMZM2G097638 Zea mays GRMZM2G097638 I
GRMZM2G147346 Zea mays GRMZM2G147346 I
GRMZM5G833253 Zea mays GRMZM5G833253 I