Pavir.Fb01900 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fb01900 T289201_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01900.1.p Myb 15 62
Pavir.Fb01900.1.p Myb 69 113

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00111p00072510 Amborella trichopoda AMTR_s00111p00072510 N 0.745
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.745
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.763
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.786
DUO1 Arabidopsis thaliana AT3G60460 N 0.786
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.786
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N 0.717
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.810
Bo8g095200 Brassica oleracea Bo8g095200 N 0.797
Bo6g077030 Brassica oleracea Bo6g077030 N 0.777
Bra003413 Brassica rapa Bra003413 N 0.786
Bra007536 Brassica rapa Bra007536 N 0.797
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.810
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.810
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.840
Ca_19557 Cicer arietinum Ca_19557 N 0.735
Ca_18954 Cicer arietinum Ca_18954 N 0.748
Cla006831 Citrullus lanatus Cla006831 N 0.806
Cla010897 Citrullus lanatus Cla010897 N 0.761
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.816
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.816
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.793
Cucsa.094180 Cucumis sativus Cucsa.094180 N 0.737
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.812
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.776
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.798
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.815
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.816
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.721
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.730
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.807
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.672
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.792
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.675
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.709
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.839
MDP0000319634 Malus domestica MDP0000319634 N 0.843
MDP0000237596 Malus domestica MDP0000237596 N 0.843
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.796
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.796
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.819
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.798
mgf019330m Mimulus guttatus mgf019330m N 0.799
mgf004314m Mimulus guttatus mgf004314m N 0.672
GSMUA_Achr1G01660_001 Musa acuminata GSMUA_Achr1G01660_001 N 0.734
OBART04G20790 Oryza barthii OBART04G20790 N 0.834
OB04G27810 Oryza brachyantha OB04G27810 N 0.834
OB08G27600 Oryza brachyantha OB08G27600 N 0.683
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.834
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.834
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.834
OLONG_013759 Oryza longistaminata OLONG_013759 N 0.672
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.834
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.834
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.834
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.834
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N 0.841
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.850
Pavir.J30013 Panicum virgatum Pavir.J30013 N 0.842
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.842
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.786
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.786
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N 0.810
Pm017596 Prunus mume Pm017596 N 0.840
Pm031387 Prunus mume Pm031387 N 0.824
Pm019530 Prunus mume Pm019530 N 0.824
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.824
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.819
30174.m008784 Ricinus communis 30174.m008784 N 0.840
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.793
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.810
SELMODRAFT_118852 Selaginella moellendorffii SELMODRAFT_118852 N 0.695
SELMODRAFT_116971 Selaginella moellendorffii SELMODRAFT_116971 N 0.695
Si015815m.g Setaria italica Si015815m.g N 0.841
Si012032m.g Setaria italica Si012032m.g N 0.850
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.764
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.785
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.799
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.806
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.821
TCM_005653 Theobroma cacao TCM_005653 N 0.840
TCM_014872 Theobroma cacao TCM_014872 N 0.763
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.827
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.827
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.801
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.833
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.834
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.796
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.804