nhr-88 (Caenorhabditis elegans)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 WBGene00003678 T306201_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-3
M00687_2.00 		Caenorhabditis elegans
NNHGDHYANN
NNTRDHCDNN		 PBM
Narasimhan et al.(2015)
pTH9163 		0.880 0.629
nhr-7
M00689_2.00 		Caenorhabditis elegans
WAAGAYCAN
NTGRTCTTW		 PBM
Narasimhan et al.(2015)
pTH10645 		0.830 0.586
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
K08A2.5a.1 Nuclear receptor 34 103
K08A2.5a.2 Nuclear receptor 34 103
K08A2.5c.1 Nuclear receptor 34 103
K08A2.5c.2 Nuclear receptor 34 103

Links

Other Nuclear receptor family TFs
Other Caenorhabditis elegans TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.993
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I 0.886
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I 0.944
ANCCAN_09370 Ancylostoma caninum ANCCAN_09370 N 0.897
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.993
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I 0.886
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I 0.824
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I 0.815
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I 0.824
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I 0.758
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.993
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I 0.824
ASIM_0000041701 Anisakis simplex ASIM_0000041701 N 0.788
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I 0.762
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.834
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I 0.899
ASU_01199 Ascaris suum ASU_01199 I 0.757
ASU_04305 Ascaris suum ASU_04305 I 0.953
ASU_10946 Ascaris suum ASU_10946 I 0.886
Bm12053 Brugia malayi Bm12053 I 0.993
Bm14724 Brugia malayi Bm14724 I 0.886
Bm2389 Brugia malayi Bm2389 I 0.953
Bm4894 Brugia malayi Bm4894 I 0.993
BTMF_0000273701 Brugia timori BTMF_0000273701 I 0.886
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.993
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.814
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I 0.821
BXY_0179600 Bursaphelenchus xylophilus BXY_0179600 I 0.857
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I 0.953
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I 0.986
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.854
CBN07936 Caenorhabditis brenneri CBN07936 I 0.995
CBN08571 Caenorhabditis brenneri CBN08571 I 0.866
CBN10811 Caenorhabditis brenneri CBN10811 I 0.866
CBN13729 Caenorhabditis brenneri CBN13729 I 0.961
CBN18797 Caenorhabditis brenneri CBN18797 I 0.814
CBN19233 Caenorhabditis brenneri CBN19233 I 0.878
CBN20828 Caenorhabditis brenneri CBN20828 I 0.995
CBN26258 Caenorhabditis brenneri CBN26258 I 0.814
CBN31048 Caenorhabditis brenneri CBN31048 I 0.825
CBG01439 Caenorhabditis briggsae CBG01439 N 0.753
CBG06052 Caenorhabditis briggsae CBG06052 I 0.830
CBG07552 Caenorhabditis briggsae CBG07552 I 0.880
CBG15006 Caenorhabditis briggsae CBG15006 I 0.855
CBG17744 Caenorhabditis briggsae CBG17744 I 0.932
CBG19594 Caenorhabditis briggsae CBG19594 I 0.825
CBG19604 Caenorhabditis briggsae CBG19604 I 0.995
nhr-3 Caenorhabditis elegans WBGene00003602 D 0.880
nhr-7 Caenorhabditis elegans WBGene00003606 D 0.830
nhr-31 Caenorhabditis elegans WBGene00003625 I 0.953
nhr-97 Caenorhabditis elegans WBGene00003687 N 0.854
nhr-119 Caenorhabditis elegans WBGene00003709 I 0.781
CJA03362 Caenorhabditis japonica CJA03362 N 0.818
CJA04720 Caenorhabditis japonica CJA04720 I 0.995
CJA08328 Caenorhabditis japonica CJA08328 I 0.953
CJA13646 Caenorhabditis japonica CJA13646 I 0.875
CRE02711 Caenorhabditis remanei CRE02711 I 0.953
CRE06661 Caenorhabditis remanei CRE06661 I 0.825
CRE06667 Caenorhabditis remanei CRE06667 I 0.995
CRE09911 Caenorhabditis remanei CRE09911 I 0.855
CRE10161 Caenorhabditis remanei CRE10161 I 0.953
CRE12779 Caenorhabditis remanei CRE12779 I 0.828
CRE14116 Caenorhabditis remanei CRE14116 I 0.855
CRE15289 Caenorhabditis remanei CRE15289 I 0.880
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I 0.824
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I 0.944
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I 0.916
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.993
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I 0.949
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I 0.886
DME_0000188101 Dracunculus medinensis DME_0000188101 I 0.946
DME_0000742401 Dracunculus medinensis DME_0000742401 I 0.782
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.993
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I 0.940
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.817
GPLIN_000669000 Globodera pallida GPLIN_000669000 I 0.849
GPLIN_001106000 Globodera pallida GPLIN_001106000 I 0.903
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.993
HCOI00435200 Haemonchus contortus HCOI00435200 I 0.837
HCOI00769300 Haemonchus contortus HCOI00769300 I 0.824
HCOI00878400 Haemonchus contortus HCOI00878400 N 0.876
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.995
HCOI01406200 Haemonchus contortus HCOI01406200 I 0.824
HCOI01716000 Haemonchus contortus HCOI01716000 I 0.944
HCOI02063000 Haemonchus contortus HCOI02063000 N 0.876
HCOI02063200 Haemonchus contortus HCOI02063200 N 0.876
HCOI02063400 Haemonchus contortus HCOI02063400 N 0.876
HCOI02063800 Haemonchus contortus HCOI02063800 N 0.876
HCOI02064100 Haemonchus contortus HCOI02064100 N 0.876
HCOI02077900 Haemonchus contortus HCOI02077900 I 0.886
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I 0.944
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I 0.824
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I 0.824
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I 0.944
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.993
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I 0.818
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I 0.887
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.993
LOAG_01074 Loa loa LOAG_01074 I 0.953
LOAG_05485 Loa loa LOAG_05485 I 0.993
LOAG_18352 Loa loa LOAG_18352 I 0.886
augustus_masked-nMf.1.1.scaf06891-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06891-processed-gene-0.0 N 0.881
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I 0.846
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I 0.846
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.989
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I 0.846
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.817
Minc01725 Meloidogyne incognita Minc01725 I 0.846
Minc13525 Meloidogyne incognita Minc13525 I 0.846
Minc15420 Meloidogyne incognita Minc15420 I 0.989
NECAME_04545 Necator americanus NECAME_04545 I 0.886
NECAME_05125 Necator americanus NECAME_05125 I 0.993
NECAME_12696 Necator americanus NECAME_12696 I 0.824
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.995
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I 0.944
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I 0.781
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I 0.824
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I 0.886
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I 0.944
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.993
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I 0.886
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.993
nOo.2.0.1.g02048 Onchocerca ochengi nOo.2.0.1.g02048 N 0.895
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.993
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I 0.886
WBGene00241236 Onchocerca volvulus WBGene00241236 I 0.945
WBGene00241910 Onchocerca volvulus WBGene00241910 I 0.886
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.993
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.791
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I 0.944
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I 0.745
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.838
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.990
PTRK_0000785300 Parastrongyloides trichosuri PTRK_0000785300 I 0.805
ENSPFOG00000001827 Poecilia formosa ENSPFOG00000001827 I 0.749
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.990
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I 0.952
scaffold605-EXSNAP2012.9 Pristionchus exspectatus scaffold605-EXSNAP2012.9 I 0.780
PPA20304 Pristionchus pacificus PPA20304 I 0.884
PPA21285 Pristionchus pacificus PPA21285 I 0.990
Ppa-nhr-31 Pristionchus pacificus PPA24219 I 0.952
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I 0.926
RSKR_0000862400 Rhabditophanes kr3021 RSKR_0000862400 N 0.797
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N 0.877
nRc.2.0.1.g00257 Romanomermis culicivorax nRc.2.0.1.g00257 I 0.800
SBAD_0000391501 Soboliphyme baturini SBAD_0000391501 I 0.850
L596_g11035 Steinernema carpocapsae L596_g11035 I 0.772
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.845
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.798
L596_g25666 Steinernema carpocapsae L596_g25666 I 0.886
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.991
L596_g27130 Steinernema carpocapsae L596_g27130 I 0.751
L596_g3809 Steinernema carpocapsae L596_g3809 I 0.923
L889_g29204 Steinernema feltiae L889_g29204 I 0.991
L889_g5777 Steinernema feltiae L889_g5777 I 0.845
L889_g8361 Steinernema feltiae L889_g8361 I 0.799
L889_g8621 Steinernema feltiae L889_g8621 I 0.923
L893_g13285 Steinernema glaseri L893_g13285 I 0.774
L893_g27201 Steinernema glaseri L893_g27201 I 0.923
L893_g29388 Steinernema glaseri L893_g29388 I 0.845
L893_g29555 Steinernema glaseri L893_g29555 I 0.883
L893_g6878 Steinernema glaseri L893_g6878 I 0.993
L898_g10316 Steinernema monticolum L898_g10316 I 0.798
L898_g24498 Steinernema monticolum L898_g24498 I 0.845
L898_g2799 Steinernema monticolum L898_g2799 I 0.923
L898_g4801 Steinernema monticolum L898_g4801 I 0.991
L892_g19201 Steinernema scapterisci L892_g19201 I 0.770
L892_g650 Steinernema scapterisci L892_g650 I 0.886
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.824
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I 0.944
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.990
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.838
SPAL_0001690000 Strongyloides papillosus SPAL_0001690000 I 0.792
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.990
SSTP_0000433200 Strongyloides stercoralis SSTP_0000433200 I 0.803
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I 0.944
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.838
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.824
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.824
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.838
SVE_0662100 Strongyloides venezuelensis SVE_0662100 I 0.792
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.990
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I 0.944
SMUV_0000212501 Syphacia muris SMUV_0000212501 I 0.940
SMUV_0000428701 Syphacia muris SMUV_0000428701 I 0.878
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.811
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I 0.886
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I 0.824
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I 0.824
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I 0.882
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.993
TCNE_0000088101 Toxocara canis TCNE_0000088101 N 0.801
TCNE_0001780601 Toxocara canis TCNE_0001780601 I 0.886
D917_06779 Trichinella nativa D917_06779 I 0.814
EFV54558 Trichinella spiralis EFV54558 I 0.814
TMUE_s0002006800 Trichuris muris TMUE_s0002006800 I 0.794
WUBG_08518 Wuchereria bancrofti WUBG_08518 I 0.886
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.993