ENSXMAG00000004396 (Xiphophorus maculatus)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSXMAG00000004396 T319518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.923 0.923
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.923 0.923
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.923 0.923
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.923 0.923
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.923 0.923
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.923 0.923
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.923 0.923
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.923 0.923
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.923 0.923
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.923 0.923
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.923 0.923
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.923 0.923
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.877 0.877
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.877 0.877
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.877 0.877
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.877 0.877
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.877 0.877
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.877 0.877
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.877 0.877
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.877 0.877
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.877 0.877
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.877 0.877
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.877 0.877
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.877 0.877
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.869 0.869
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.869 0.869
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.869 0.869
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.869 0.869
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.869 0.869
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.869 0.869
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.869 0.869
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.869 0.869
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.869 0.869
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.869 0.869
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.869 0.869
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.869 0.869
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000004413 Runt 58 187

Links

Other Runt family TFs
Other Xiphophorus maculatus TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02335 Aegilops tauschii F775_02335 N 0.000
F775_08326 Aegilops tauschii F775_08326 I 0.000
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.000
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.000
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.000
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.000
LBD11 Arabidopsis thaliana AT2G28500 N 0.000
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.000
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.000
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.000
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.000
Bo3g040220 Brassica oleracea Bo3g040220 N 0.000
Bo4g165420 Brassica oleracea Bo4g165420 N 0.000
Bo5g008590 Brassica oleracea Bo5g008590 N 0.000
Bo8g112780 Brassica oleracea Bo8g112780 N 0.000
Bra000491 Brassica rapa Bra000491 N 0.000
Bra011942 Brassica rapa Bra011942 N 0.000
Bra018675 Brassica rapa Bra018675 N 0.000
Bra031599 Brassica rapa Bra031599 N 0.000
Bra035698 Brassica rapa Bra035698 N 0.000
PK23777.1 Cannabis sativa PK23777.1 I 0.000
PK27389.1 Cannabis sativa PK27389.1 I 0.000
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.000
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.000
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.000
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.000
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.000
Ca_02507 Cicer arietinum Ca_02507 N 0.000
Ca_04287 Cicer arietinum Ca_04287 I 0.000
Ca_14605 Cicer arietinum Ca_14605 I 0.000
Cla000556 Citrullus lanatus Cla000556 I 0.000
Cla005133 Citrullus lanatus Cla005133 N 0.000
Cla005134 Citrullus lanatus Cla005134 N 0.000
Cla020379 Citrullus lanatus Cla020379 I 0.000
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.000
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.000
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.000
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.000
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.000
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.000
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.000
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.000
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.000
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.000
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.000
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.000
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.000
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.000
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.000
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.000
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.000
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.000
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.000
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.000
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.000
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.000
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.000
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.000
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.000
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.000
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.000
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.000
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.000
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.000
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.000
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.000
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.000
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.000
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.000
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.000
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.000
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.000
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.000
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.000
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.000
MDP0000123013 Malus domestica MDP0000123013 I 0.000
MDP0000151784 Malus domestica MDP0000151784 I 0.000
MDP0000155138 Malus domestica MDP0000155138 I 0.000
MDP0000218986 Malus domestica MDP0000218986 I 0.000
MDP0000318244 Malus domestica MDP0000318244 I 0.000
MDP0000319331 Malus domestica MDP0000319331 I 0.000
MDP0000822986 Malus domestica MDP0000822986 I 0.000
MDP0000879799 Malus domestica MDP0000879799 N 0.000
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.000
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.000
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.000
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.000
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.000
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.000
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.000
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.000
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.000
mgf015666m Mimulus guttatus mgf015666m N 0.000
mgf018189m Mimulus guttatus mgf018189m I 0.000
mgf019622m Mimulus guttatus mgf019622m N 0.000
mgf022524m Mimulus guttatus mgf022524m N 0.000
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.000
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.000
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.000
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.000
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.000
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.000
GSMUA_Achr9G04330_001 Musa acuminata GSMUA_Achr9G04330_001 N 0.000
OBART03G13260 Oryza barthii OBART03G13260 N 0.000
OBART05G01640 Oryza barthii OBART05G01640 N 0.000
OB03G23270 Oryza brachyantha OB03G23270 N 0.000
OB05G11740 Oryza brachyantha OB05G11740 I 0.000
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.000
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.000
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.000
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.000
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.000
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.000
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.000
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.000
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.000
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.000
OS03G0287400 Oryza sativa OS03G0287400 N 0.000
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.000
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.000
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.000
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.000
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.000
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.000
Pm000938 Prunus mume Pm000938 I 0.000
Pm018585 Prunus mume Pm018585 I 0.000
Pm018982 Prunus mume Pm018982 I 0.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.000
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.000
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.000
30111.m000703 Ricinus communis 30111.m000703 I 0.000
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.000
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.000
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.000
Si024430m.g Setaria italica Si024430m.g N 0.000
Si037280m.g Setaria italica Si037280m.g N 0.000
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.000
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.000
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.000
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.000
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.000
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.000
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.000
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.000
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.000
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.000
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.000
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.000
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.000
TCM_041094 Theobroma cacao TCM_041094 I 0.000
TCM_043081 Theobroma cacao TCM_043081 I 0.000
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.000
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.000
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.000
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.000
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.000
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.000
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.000
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.000
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.000
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.000
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.000
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.000
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.000
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.000
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.000
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.000
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.000
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.000
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.000