Pavir.Da00293 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.Da00293 T323621_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.915 0.813
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.904 0.787
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.893 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00293.1.p SBP 82 156

Links

Other SBP family TFs
Other Panicum virgatum TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00761 Aegilops tauschii F775_00761 I 0.956
F775_20508 Aegilops tauschii F775_20508 N 0.928
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.925
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.941
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.915
SPL8 Arabidopsis thaliana AT1G02065 D 0.915
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.915
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.981
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.984
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.929
Bo5g001290 Brassica oleracea Bo5g001290 I 0.915
Bo8g118210 Brassica oleracea Bo8g118210 I 0.915
Bra032662 Brassica rapa Bra032662 I 0.915
Bra033221 Brassica rapa Bra033221 I 0.915
PK25779.1 Cannabis sativa PK25779.1 I 0.910
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.915
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.915
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.910
Ca_16243 Cicer arietinum Ca_16243 I 0.894
Ca_18942 Cicer arietinum Ca_18942 I 0.910
Cla006776 Citrullus lanatus Cla006776 I 0.907
Cla020006 Citrullus lanatus Cla020006 I 0.938
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.910
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.910
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.924
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.891
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.910
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.915
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.909
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.893
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.937
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.910
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.894
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.910
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.894
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.910
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.910
MLOC_326 Hordeum vulgare MLOC_326 I 0.985
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.983
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.929
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.969
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.981
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.929
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.985
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.909
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.907
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.892
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.894
MDP0000158607 Malus domestica MDP0000158607 I 0.890
MDP0000803116 Malus domestica MDP0000803116 I 0.908
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.910
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.914
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.894
mgf016085m Mimulus guttatus mgf016085m I 0.908
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.941
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.912
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.949
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.952
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.920
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.920
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.909
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.965
OBART04G27990 Oryza barthii OBART04G27990 I 0.929
OBART06G23500 Oryza barthii OBART06G23500 I 0.978
OB02G15090 Oryza brachyantha OB02G15090 I 0.981
OB04G34990 Oryza brachyantha OB04G34990 I 0.929
OB06G31100 Oryza brachyantha OB06G31100 I 0.985
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.970
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.929
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.985
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.929
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.985
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.970
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.929
SPL10 Oryza indica BGIOSGA023408 I 0.985
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.929
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.970
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.929
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.985
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.985
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.929
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.980
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.929
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.985
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.929
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.985
SPL5 Oryza sativa OS02G0177300 I 0.970
SPL8 Oryza sativa OS04G0656500 I 0.929
SPL10 Oryza sativa OS06G0659100 I 0.985
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.976
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.985
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.929
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.929
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.932
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.893
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.904
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.908
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.930
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.910
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.910
Pm011381 Prunus mume Pm011381 I 0.890
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.890
29983.m003158 Ricinus communis 29983.m003158 I 0.923
30174.m008803 Ricinus communis 30174.m008803 I 0.910
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.907
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.910
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.941
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.936
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.898
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.898
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.936
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.939
Si006559m.g Setaria italica Si006559m.g I 0.985
Si017338m.g Setaria italica Si017338m.g I 0.977
Si022315m.g Setaria italica Si022315m.g I 0.929
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.910
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.902
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.910
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.910
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.910
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.918
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.984
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.929
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.985
TCM_005622 Theobroma cacao TCM_005622 I 0.910
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.975
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.928
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.985
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.974
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.929
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.963
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.907
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.929
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.927
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.985
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.984
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.977