fgenesh1_pg.00866_#_414 (Aspergillus carbonarius)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.00866_#_414 T335224_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NHP6A
M01566_2.00 		Saccharomyces cerevisiae
NHRYWWWN
NWWWRYDN		 PBM
Zhu et al.(2009)
Nhp6a 		0.608 0.739
NHP6A
M08606_2.00 		Saccharomyces cerevisiae
DNDHNNWTATATADWRDNNDN
NHNNHYWHTATATAWNNDHNH		 Misc
DeBoer et al.(2011)
YPR052C_879 		0.608 0.739
NHP6B
M01565_2.00 		Saccharomyces cerevisiae
NNWHWRYDNN
NNHRYWDWNN		 PBM
Zhu et al.(2009)
Nhp6b 		0.608 0.725
NHP6B
M08603_2.00 		Saccharomyces cerevisiae
HNTHHNWWTATAWWWWRNDN
NHNYWWWWTATAWWNDDAND		 Misc
DeBoer et al.(2011)
YBR089C-A_792 		0.608 0.725
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.00866_#_414 Sox 26 94

Links

Other Sox family TFs
Other Aspergillus carbonarius TFs

382 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N
DUO1 Arabidopsis thaliana AT3G60460 N
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N
Bo6g077030 Brassica oleracea Bo6g077030 N
Bo8g095200 Brassica oleracea Bo8g095200 N
Bra003413 Brassica rapa Bra003413 N
Bra007536 Brassica rapa Bra007536 N
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N
Carubv10019483m.g Capsella rubella Carubv10019483m.g N
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N
Ca_18954 Cicer arietinum Ca_18954 N
Ca_19557 Cicer arietinum Ca_19557 N
Cla006831 Citrullus lanatus Cla006831 N
Cla010897 Citrullus lanatus Cla010897 N
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N
Cucsa.094180 Cucumis sativus Cucsa.094180 N
Cucsa.121070 Cucumis sativus Cucsa.121070 N
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N
GLYMA03G26830 Glycine max GLYMA03G26830 N
GLYMA12G37026 Glycine max GLYMA12G37026 N
GLYMA07G14480 Glycine max GLYMA07G14480 N
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N
LPERR04G16870 Leersia perrieri LPERR04G16870 N
Lus10009780.g Linum usitatissimum Lus10009780.g N
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N
MDP0000237596 Malus domestica MDP0000237596 N
MDP0000319634 Malus domestica MDP0000319634 N
cassava17368.m1 Manihot esculenta cassava17368.m1 N
cassava19913.m1 Manihot esculenta cassava19913.m1 N
MTR_8g006470 Medicago truncatula MTR_8g006470 N
MTR_4g029540 Medicago truncatula MTR_4g029540 N
mgf019330m Mimulus guttatus mgf019330m N
mgf004314m Mimulus guttatus mgf004314m N
OBART04G20790 Oryza barthii OBART04G20790 N
OB04G27810 Oryza brachyantha OB04G27810 N
OB08G27600 Oryza brachyantha OB08G27600 N
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N
BGIOSGA016880 Oryza indica BGIOSGA016880 N
OMERI04G17240 Oryza meridionalis OMERI04G17240 N
ONIVA04G19030 Oryza nivara ONIVA04G19030 N
OPUNC04G18480 Oryza punctata OPUNC04G18480 N
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N
Pavir.J35399 Panicum virgatum Pavir.J35399 N
Pavir.J30013 Panicum virgatum Pavir.J30013 N
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N
POPTR_0002s14180 Populus trichocarpa POPTR_0002s14180 N
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N
Pm019530 Prunus mume Pm019530 N
Pm031387 Prunus mume Pm031387 N
Pm017596 Prunus mume Pm017596 N
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N
30174.m008784 Ricinus communis 30174.m008784 N
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N
Si015815m.g Setaria italica Si015815m.g N
Si012032m.g Setaria italica Si012032m.g N
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N
Sb06g024510 Sorghum bicolor Sb06g024510 N
Sb07g027160 Sorghum bicolor Sb07g027160 N
TCM_014872 Theobroma cacao TCM_014872 N
TCM_005653 Theobroma cacao TCM_005653 N
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N
DUO1 Vitis vinifera VIT_15s0021g02040 N
GRMZM2G311059 Zea mays GRMZM2G311059 N
GRMZM2G105137 Zea mays GRMZM2G105137 N
GRMZM2G046443 Zea mays GRMZM2G046443 N