PDK_20s1536561g001 (Phoenix dactylifera)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 PDK_20s1536561g001 T343299_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.725 0.725
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.725 0.725
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.725 0.725
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.725 0.725
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.725 0.725
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.725 0.725
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.725 0.725
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.725 0.725
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.725 0.725
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.725 0.725
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.716 0.716
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.716 0.716
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.716 0.716
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1536561g001 TBP 1 25
PDK_20s1536561g001 TBP 33 116

Links

Other TBP family TFs
Other Phoenix dactylifera TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK24260.1 Cannabis sativa PK24260.1 N
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N
Ca_22597 Cicer arietinum Ca_22597 N
Ciclev10016303m.g Citrus clementina Ciclev10016303m.g I
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I
Eucgr.A01766 Eucalyptus grandis Eucgr.A01766 I
Eucgr.A01767 Eucalyptus grandis Eucgr.A01767 I
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
GLYMA06G45540 Glycine max GLYMA06G45540 N
GLYMA06G45531 Glycine max GLYMA06G45531 N
GLYMA06G45547 Glycine max GLYMA06G45547 N
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GLYMA12G11340 Glycine max GLYMA12G11340 N
GLYMA12G11390 Glycine max GLYMA12G11390 N
GLYMA12G32530 Glycine max GLYMA12G32530 I
GLYMA12G32541 Glycine max GLYMA12G32541 N
GLYMA13G37903 Glycine max GLYMA13G37903 I
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I
Lus10018547.g Linum usitatissimum Lus10018547.g N
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039735.g Linum usitatissimum Lus10039735.g I
chr3.LjT47O18.40.nc Lotus japonicus chr3.LjT47O18.40.nc N
chr3.LjT47O18.60.nc Lotus japonicus chr3.LjT47O18.60.nc N
MDP0000407613 Malus domestica MDP0000407613 N
MDP0000155426 Malus domestica MDP0000155426 I
cassava6764.valid.m1 Manihot esculenta cassava6764.valid.m1 I
MTR_0008s0390 Medicago truncatula MTR_0008s0390 N
MTR_0251s0050 Medicago truncatula MTR_0251s0050 N
MTR_2g089420 Medicago truncatula MTR_2g089420 N
MTR_2g089450 Medicago truncatula MTR_2g089450 N
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
POPTR_0019s14130 Populus trichocarpa POPTR_0019s14130 N
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I
Pm015302 Prunus mume Pm015302 N
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
SapurV1A.2051s0040 Salix purpurea SapurV1A.2051s0040 I
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N
SapurV1A.0417s0130 Salix purpurea SapurV1A.0417s0130 I
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
SapurV1A.0048s0170 Salix purpurea SapurV1A.0048s0170 I
Solyc07g053230.2 Solanum lycopersicum Solyc07g053230.2 I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
Solyc12g005640.1 Solanum lycopersicum Solyc12g005640.1 N
PGSC0003DMG402026177 Solanum tuberosum PGSC0003DMG402026177 I
PGSC0003DMG400013752 Solanum tuberosum PGSC0003DMG400013752 N
PGSC0003DMG401026177 Solanum tuberosum PGSC0003DMG401026177 I
TCM_007868 Theobroma cacao TCM_007868 I
TCM_007865 Theobroma cacao TCM_007865 I
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I