Bo7g098260 (Brassica oleracea)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Bo7g098260 T343755_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.971 0.544
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.971 0.538
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.943 0.380
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.921 0.405
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.921 0.405
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.907 0.342
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.907 0.342
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.891 0.316
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.883 0.310
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.867 0.291
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.865 0.285
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.865 0.285
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.858 0.285
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.857 0.291
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.857 0.291
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.857 0.291
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g098260.1 TCP 64 363

Links

Other TCP family TFs
Other Brassica oleracea TFs

425 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N
MBD11 Arabidopsis lyrata scaffold_301848.1 N
MBD10 Arabidopsis thaliana AT1G15340 N
MBD11 Arabidopsis thaliana AT3G15790 N
Bostr.28625s0113 Boechera stricta Bostr.28625s0113 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Bo8g066360 Brassica oleracea Bo8g066360 N
Bra016665 Brassica rapa Bra016665 N
Bra021136 Brassica rapa Bra021136 N
PK04144.1 Cannabis sativa PK04144.1 N
PK24888.1 Cannabis sativa PK24888.1 N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
Ca_19192 Cicer arietinum Ca_19192 N
Ca_06682 Cicer arietinum Ca_06682 N
Cla012920 Citrullus lanatus Cla012920 N
Cla012423 Citrullus lanatus Cla012423 N
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N
Ciclev10025929m.g Citrus clementina Ciclev10025929m.g N
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N
orange1.1g022816m.g Citrus sinensis orange1.1g022816m.g N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N
gene15686-v1.0-hybrid Fragaria vesca gene15686-v1.0-hybrid N
GLYMA15G01040 Glycine max GLYMA15G01040 N
GLYMA06G30590 Glycine max GLYMA06G30590 N
GLYMA06G30350 Glycine max GLYMA06G30350 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA04G23780 Glycine max GLYMA04G23780 N
Gorai.006G101100 Gossypium raimondii Gorai.006G101100 N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
Lus10019406.g Linum usitatissimum Lus10019406.g N
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N
MDP0000574053 Malus domestica MDP0000574053 N
MDP0000462461 Malus domestica MDP0000462461 N
MDP0000375866 Malus domestica MDP0000375866 N
MDP0000248422 Malus domestica MDP0000248422 N
MDP0000152128 Malus domestica MDP0000152128 N
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N
MTR_4g114770 Medicago truncatula MTR_4g114770 N
MTR_4g114785 Medicago truncatula MTR_4g114785 N
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N
Pm013666 Prunus mume Pm013666 N
Pm027560 Prunus mume Pm027560 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N
29841.m002855 Ricinus communis 29841.m002855 N
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N
Solyc06g068140.2 Solanum lycopersicum Solyc06g068140.2 N
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
TCM_027169 Theobroma cacao TCM_027169 N
TCM_038107 Theobroma cacao TCM_038107 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N