Bra029350 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029350 T268036_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.726 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029350.1-P Myb 14 61
Bra029350.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g161170 Brassica oleracea Bo2g161170 I 0.885
MYB34 Arabidopsis thaliana AT5G60890 I 0.863
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.863
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.859
Bra013000 Brassica rapa Bra013000 I 0.854
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.854
Bo7g098110 Brassica oleracea Bo7g098110 I 0.851
Bo2g161180 Brassica oleracea Bo2g161180 I 0.839
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.829
Bra029349 Brassica rapa Bra029349 I 0.815
Bo9g014380 Brassica oleracea Bo9g014380 I 0.807
Bra035954 Brassica rapa Bra035954 I 0.798
Bra031035 Brassica rapa Bra031035 I 0.744
Bo8g104300 Brassica oleracea Bo8g104300 I 0.744
Bo8g067910 Brassica oleracea Bo8g067910 I 0.742
Bra016553 Brassica rapa Bra016553 I 0.742
Bo5g025570 Brassica oleracea Bo5g025570 I 0.729
Bra025666 Brassica rapa Bra025666 I 0.729
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.729
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.726
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.726
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.726
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.726
MYB51 Arabidopsis thaliana AT1G18570 D 0.726
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.716
Bo2g080900 Brassica oleracea Bo2g080900 I 0.711
PK14811.1 Cannabis sativa PK14811.1 I 0.708
Bra008131 Brassica rapa Bra008131 I 0.701
PK01174.1 Cannabis sativa PK01174.1 I 0.700
Bra015939 Brassica rapa Bra015939 I 0.696
Bo6g118350 Brassica oleracea Bo6g118350 I 0.696
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.692
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.690
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.689
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.689
PK27708.1 Cannabis sativa PK27708.1 I 0.689
MYB122 Arabidopsis thaliana AT1G74080 I 0.686
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.685
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.683
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.678
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.678
Bra005949 Brassica rapa Bra005949 I 0.677
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.677
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.674
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I 0.674
MYB29 Arabidopsis thaliana AT5G07690 I 0.674
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.674
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.674
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.674
Pm027048 Prunus mume Pm027048 I 0.674
PK21058.1 Cannabis sativa PK21058.1 I 0.673
Eucgr.F02583 Eucalyptus grandis Eucgr.F02583 I 0.673
MTR_3g097450 Medicago truncatula MTR_3g097450 I 0.673
Gorai.003G021100 Gossypium raimondii Gorai.003G021100 I 0.673
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.673
Gorai.009G288900 Gossypium raimondii Gorai.009G288900 I 0.673
28154.m000040 Ricinus communis 28154.m000040 I 0.673
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.670
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.669
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.669
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.665
GLYMA06G16820 Glycine max GLYMA06G16820 I 0.664
MDP0000887107 Malus domestica MDP0000887107 I 0.664
GLYMA04G38240 Glycine max GLYMA04G38240 I 0.664
cassava4975.m1 Manihot esculenta cassava4975.m1 I 0.664
cassava1644.valid.m1 Manihot esculenta cassava1644.valid.m1 I 0.664
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I 0.663
Bo9g175680 Brassica oleracea Bo9g175680 I 0.663
MYB28 Arabidopsis thaliana AT5G61420 I 0.662
Bo2g161590 Brassica oleracea Bo2g161590 I 0.662
Bo9g014610 Brassica oleracea Bo9g014610 I 0.662
Bo3g004500 Brassica oleracea Bo3g004500 I 0.662
Bra029311 Brassica rapa Bra029311 I 0.662
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.662
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.662
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.662
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.662
Bra035929 Brassica rapa Bra035929 I 0.662
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.662
LjSGA_007368.1 Lotus japonicus LjSGA_007368.1 I 0.661