Bra016553 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra016553 T267889_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.857 0.946
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.678 0.731
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.669 0.720
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.669 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016553.1-P Myb 15 62
Bra016553.1-P Myb 68 113

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo8g104300 Brassica oleracea Bo8g104300 I 0.874
Bo8g067910 Brassica oleracea Bo8g067910 I 0.870
Bra031035 Brassica rapa Bra031035 I 0.865
MYB51 Arabidopsis thaliana AT1G18570 D 0.857
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.857
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.857
Bo5g025570 Brassica oleracea Bo5g025570 I 0.848
Bra025666 Brassica rapa Bra025666 I 0.848
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.848
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.839
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.839
Bo2g080900 Brassica oleracea Bo2g080900 I 0.785
Bo6g118350 Brassica oleracea Bo6g118350 I 0.783
Bra015939 Brassica rapa Bra015939 I 0.783
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.777
MYB122 Arabidopsis thaliana AT1G74080 I 0.772
MYB34 Arabidopsis thaliana AT5G60890 I 0.766
Bo7g098110 Brassica oleracea Bo7g098110 I 0.766
Bo9g014380 Brassica oleracea Bo9g014380 I 0.766
Bra013000 Brassica rapa Bra013000 I 0.766
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.766
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.766
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.766
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.766
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.763
Bra008131 Brassica rapa Bra008131 I 0.758
Bra035954 Brassica rapa Bra035954 I 0.757
Bo2g161180 Brassica oleracea Bo2g161180 I 0.746
Bra029349 Brassica rapa Bra029349 I 0.746
Bra029350 Brassica rapa Bra029350 I 0.742
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.727
Bo2g161170 Brassica oleracea Bo2g161170 I 0.724
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.724
MYB29 Arabidopsis thaliana AT5G07690 I 0.721
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.721
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.721
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.721
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.721
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.720
Bra005949 Brassica rapa Bra005949 I 0.717
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.717
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.716
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.712
Bo9g175680 Brassica oleracea Bo9g175680 I 0.711
MYB28 Arabidopsis thaliana AT5G61420 I 0.710
Bo2g161590 Brassica oleracea Bo2g161590 I 0.710
Bo9g014610 Brassica oleracea Bo9g014610 I 0.710
Bra035929 Brassica rapa Bra035929 I 0.710
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.710
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.710
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.710
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.710
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.710
PK14811.1 Cannabis sativa PK14811.1 I 0.710
PK27708.1 Cannabis sativa PK27708.1 I 0.708
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.705
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.703
MYB76 Arabidopsis thaliana AT5G07700 I 0.703
Bo7g098590 Brassica oleracea Bo7g098590 I 0.699
Bra012961 Brassica rapa Bra012961 I 0.699
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.699
GSMUA_Achr6G25420_001 Musa acuminata GSMUA_Achr6G25420_001 I 0.699
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.699
Bo3g004500 Brassica oleracea Bo3g004500 I 0.698
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.690
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.690
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.690
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.687
Bra029311 Brassica rapa Bra029311 I 0.685
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.684
TCM_012631 Theobroma cacao TCM_012631 I 0.682
Bostr.3288s0058 Boechera stricta Bostr.3288s0058 I 0.682
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.682
TCM_014091 Theobroma cacao TCM_014091 I 0.681
GSMUA_Achr5G17010_001 Musa acuminata GSMUA_Achr5G17010_001 I 0.680
MYB3 Arabidopsis thaliana AT1G22640 D 0.678
Bo7g057770 Brassica oleracea Bo7g057770 I 0.678
Bo8g071580 Brassica oleracea Bo8g071580 I 0.678
Bra012337 Brassica rapa Bra012337 I 0.678
ATMYB3 Arabidopsis lyrata fgenesh2_kg.1__2457__AT1G22640.1 I 0.678
MLOC_65957 Hordeum vulgare MLOC_65957 I 0.678
Cagra.0114s0040 Capsella grandiflora Cagra.0114s0040 I 0.678
Carubv10009761m.g Capsella rubella Carubv10009761m.g I 0.678
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.678
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.678
Thhalv10008456m.g Eutrema salsugineum Thhalv10008456m.g I 0.678
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.675
AMTR_s00139p00079430 Amborella trichopoda AMTR_s00139p00079430 I 0.675
BGIOSGA034924 Oryza indica BGIOSGA034924 I 0.675
GSMUA_Achr3G22200_001 Musa acuminata GSMUA_Achr3G22200_001 I 0.675
LPERR11G04310 Leersia perrieri LPERR11G04310 I 0.675
OB11G14080 Oryza brachyantha OB11G14080 I 0.675
OBART11G04950 Oryza barthii OBART11G04950 I 0.675
OGLUM11G04790 Oryza glumaepatula OGLUM11G04790 I 0.675
ONIVA11G05280 Oryza nivara ONIVA11G05280 I 0.675
OPUNC11G04750 Oryza punctata OPUNC11G04750 I 0.675
ORGLA11G0047500 Oryza glaberrima ORGLA11G0047500 I 0.675
ORUFI11G04860 Oryza rufipogon ORUFI11G04860 I 0.675
OS11G0180900 Oryza sativa OS11G0180900 I 0.675
PGSC0003DMG400031317 Solanum tuberosum PGSC0003DMG400031317 I 0.675
POPTR_0019s11090 Populus trichocarpa POPTR_0019s11090 I 0.675
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.675
Solyc06g065100.2 Solanum lycopersicum Solyc06g065100.2 I 0.675
TCM_036404 Theobroma cacao TCM_036404 I 0.675
Traes_4AL_CC5803BED Triticum aestivum Traes_4AL_CC5803BED I 0.675
Traes_4BS_6253482BD Triticum aestivum Traes_4BS_6253482BD I 0.675
Traes_4DS_7BFAC49C2 Triticum aestivum Traes_4DS_7BFAC49C2 I 0.675
Cla012721 Citrullus lanatus Cla012721 I 0.675
Pm004199 Prunus mume Pm004199 I 0.675
28154.m000040 Ricinus communis 28154.m000040 I 0.675
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.675
Bostr.12659s0116 Boechera stricta Bostr.12659s0116 I 0.675
Eucgr.F02583 Eucalyptus grandis Eucgr.F02583 I 0.675
gene25685-v1.0-hybrid Fragaria vesca gene25685-v1.0-hybrid I 0.675
Gorai.009G263200 Gossypium raimondii Gorai.009G263200 I 0.675
Gorai.009G288900 Gossypium raimondii Gorai.009G288900 I 0.675
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.675
MDP0000872821 Malus domestica MDP0000872821 I 0.675
PK21058.1 Cannabis sativa PK21058.1 I 0.675
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.673
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.673
MDP0000209761 Malus domestica MDP0000209761 I 0.673
Bo7g117140 Brassica oleracea Bo7g117140 I 0.672
Bra017685 Brassica rapa Bra017685 I 0.672
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.672
Lus10001548.g Linum usitatissimum Lus10001548.g I 0.672
Lus10009448.g Linum usitatissimum Lus10009448.g I 0.672
Eucgr.B00865 Eucalyptus grandis Eucgr.B00865 I 0.671
GSMUA_Achr10G04590_001 Musa acuminata GSMUA_Achr10G04590_001 I 0.670
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.670
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.670
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.670
MYB4 Arabidopsis thaliana AT4G38620 D 0.669
BRADI4G23967 Brachypodium distachyon BRADI4G23967 I 0.669
GRMZM2G000818 Zea mays GRMZM2G000818 I 0.669
GSMUA_Achr8G33900_001 Musa acuminata GSMUA_Achr8G33900_001 I 0.669
POPTR_0005s11410 Populus trichocarpa POPTR_0005s11410 I 0.669
POPTR_0009s13640 Populus trichocarpa POPTR_0009s13640 I 0.669
POPTR_0015s04300 Populus trichocarpa POPTR_0015s04300 I 0.669
Sb02g031190 Sorghum bicolor Sb02g031190 I 0.669
Si030943m.g Setaria italica Si030943m.g I 0.669
Pavir.Ba01213 Panicum virgatum Pavir.Ba01213 I 0.669
Pavir.Bb02469 Panicum virgatum Pavir.Bb02469 I 0.669
SapurV1A.0923s0040 Salix purpurea SapurV1A.0923s0040 I 0.669
SapurV1A.1807s0010 Salix purpurea SapurV1A.1807s0010 I 0.669
LjSGA_007368.1 Lotus japonicus LjSGA_007368.1 I 0.669
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.668
BGIOSGA029363 Oryza indica BGIOSGA029363 I 0.666
Bo1g006820 Brassica oleracea Bo1g006820 I 0.666
Bo3g149450 Brassica oleracea Bo3g149450 I 0.666
Bo7g119670 Brassica oleracea Bo7g119670 I 0.666
Bra010736 Brassica rapa Bra010736 I 0.666
Bra011576 Brassica rapa Bra011576 I 0.666
Bra033572 Brassica rapa Bra033572 I 0.666
BRADI4G36460 Brachypodium distachyon BRADI4G36460 I 0.666
ATMYB4 Arabidopsis lyrata fgenesh2_kg.7__59__AT4G38620.1 I 0.666
GLYMA04G38240 Glycine max GLYMA04G38240 I 0.666
GLYMA06G16820 Glycine max GLYMA06G16820 I 0.666
GLYMA11G11450 Glycine max GLYMA11G11450 I 0.666
GLYMA12G03600 Glycine max GLYMA12G03600 I 0.666
GSMUA_Achr1G26520_001 Musa acuminata GSMUA_Achr1G26520_001 I 0.666
GSMUA_Achr9G24180_001 Musa acuminata GSMUA_Achr9G24180_001 I 0.666
MTR_3g097450 Medicago truncatula MTR_3g097450 I 0.666
MTR_4g073420 Medicago truncatula MTR_4g073420 I 0.666
OB09G24400 Oryza brachyantha OB09G24400 I 0.666
ORGLA09G0141200 Oryza glaberrima ORGLA09G0141200 I 0.666
ORUFI09G19350 Oryza rufipogon ORUFI09G19350 I 0.666
OS09G0538400 Oryza sativa OS09G0538400 I 0.666
PGSC0003DMG400006176 Solanum tuberosum PGSC0003DMG400006176 I 0.666
PGSC0003DMG400013215 Solanum tuberosum PGSC0003DMG400013215 I 0.666
POPTR_0004s18020 Populus trichocarpa POPTR_0004s18020 I 0.666
PRUPE_ppa010277mg Prunus persica PRUPE_ppa010277mg I 0.666
Solyc01g111500.2 Solanum lycopersicum Solyc01g111500.2 I 0.666
Solyc10g055410.1 Solanum lycopersicum Solyc10g055410.1 I 0.666
TCM_006638 Theobroma cacao TCM_006638 I 0.666
VIT_03s0038g02310 Vitis vinifera VIT_03s0038g02310 I 0.666
Ca_11026 Cicer arietinum Ca_11026 I 0.666
Cla020592 Citrullus lanatus Cla020592 I 0.666
Pm020852 Prunus mume Pm020852 I 0.666
29602.m000218 Ricinus communis 29602.m000218 I 0.666
cassava1644.valid.m1 Manihot esculenta cassava1644.valid.m1 I 0.666
cassava29150.valid.m1 Manihot esculenta cassava29150.valid.m1 I 0.666
cassava30431.valid.m1 Manihot esculenta cassava30431.valid.m1 I 0.666
cassava4975.m1 Manihot esculenta cassava4975.m1 I 0.666
Cucsa.234310 Cucumis sativus Cucsa.234310 I 0.666
mgf012705m Mimulus guttatus mgf012705m I 0.666
Bostr.25542s0045 Boechera stricta Bostr.25542s0045 I 0.666
Eucgr.I01406 Eucalyptus grandis Eucgr.I01406 I 0.666
evm.TU.supercontig_37.149 Carica papaya evm.TU.supercontig_37.149 I 0.666
gene07646-v1.0-hybrid Fragaria vesca gene07646-v1.0-hybrid I 0.666
Gorai.002G196700 Gossypium raimondii Gorai.002G196700 I 0.666
Gorai.005G254000 Gossypium raimondii Gorai.005G254000 I 0.666
Gorai.008G035700 Gossypium raimondii Gorai.008G035700 I 0.666
MDP0000249611 Malus domestica MDP0000249611 I 0.666
SapurV1A.2094s0030 Salix purpurea SapurV1A.2094s0030 I 0.666
Thhalv10025886m.g Eutrema salsugineum Thhalv10025886m.g I 0.666
PK29029.1 Cannabis sativa PK29029.1 I 0.666
GLYMA20G01610 Glycine max GLYMA20G01610 I 0.664
GSMUA_Achr8G32480_001 Musa acuminata GSMUA_Achr8G32480_001 I 0.664
MYB32 Arabidopsis thaliana AT4G34990 I 0.663
GRMZM2G077789 Zea mays GRMZM2G077789 I 0.663
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.663
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.663
Bostr.7867s1358 Boechera stricta Bostr.7867s1358 I 0.663
Cagra.2350s0045 Capsella grandiflora Cagra.2350s0045 I 0.663
Carubv10005438m.g Capsella rubella Carubv10005438m.g I 0.663
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.663
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.663
PRUPE_ppa011954mg Prunus persica PRUPE_ppa011954mg I 0.662
PRUPE_ppa019522mg Prunus persica PRUPE_ppa019522mg I 0.662
Pm025102 Prunus mume Pm025102 I 0.662
Pm025103 Prunus mume Pm025103 I 0.662
gene09406-v1.0-hybrid Fragaria vesca gene09406-v1.0-hybrid I 0.662
MYB6 Arabidopsis thaliana AT4G09460 I 0.661
AtMYB6 Arabidopsis lyrata fgenesh2_kg.6__2929__AT4G09460.1 I 0.661
GLYMA07G33960 Glycine max GLYMA07G33960 I 0.661
Thhalv10028861m.g Eutrema salsugineum Thhalv10028861m.g I 0.661
PK01174.1 Cannabis sativa PK01174.1 I 0.661