Bra035954 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra035954 T268106_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.782 0.806
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.672 0.753
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.672 0.753
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035954.1-P Myb 14 61
Bra035954.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g014380 Brassica oleracea Bo9g014380 I 0.883
MYB34 Arabidopsis thaliana AT5G60890 I 0.833
Bra013000 Brassica rapa Bra013000 I 0.833
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.833
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.833
Bo7g098110 Brassica oleracea Bo7g098110 I 0.830
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.829
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.829
Bo2g161180 Brassica oleracea Bo2g161180 I 0.809
Bra029350 Brassica rapa Bra029350 I 0.798
Bo8g104300 Brassica oleracea Bo8g104300 I 0.789
Bra031035 Brassica rapa Bra031035 I 0.789
Bo8g067910 Brassica oleracea Bo8g067910 I 0.787
Bra029349 Brassica rapa Bra029349 I 0.785
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.785
MYB51 Arabidopsis thaliana AT1G18570 D 0.782
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.782
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.782
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.782
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.782
Bo2g161170 Brassica oleracea Bo2g161170 I 0.780
Bra016553 Brassica rapa Bra016553 I 0.757
Bo5g025570 Brassica oleracea Bo5g025570 I 0.755
Bra025666 Brassica rapa Bra025666 I 0.755
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.736
MYB122 Arabidopsis thaliana AT1G74080 I 0.731
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.731
PK14811.1 Cannabis sativa PK14811.1 I 0.724
PK27708.1 Cannabis sativa PK27708.1 I 0.723
MYB29 Arabidopsis thaliana AT5G07690 I 0.719
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.719
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.719
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.719
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.719
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.714
Bra005949 Brassica rapa Bra005949 I 0.712
Bo6g118350 Brassica oleracea Bo6g118350 I 0.711
Bra015939 Brassica rapa Bra015939 I 0.711
Bo9g175680 Brassica oleracea Bo9g175680 I 0.709
MYB28 Arabidopsis thaliana AT5G61420 I 0.708
Bo2g161590 Brassica oleracea Bo2g161590 I 0.708
Bo3g004500 Brassica oleracea Bo3g004500 I 0.708
Bo9g014610 Brassica oleracea Bo9g014610 I 0.708
Bra035929 Brassica rapa Bra035929 I 0.708
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.708
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.708
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.708
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.708
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.708
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.707
Bo2g080900 Brassica oleracea Bo2g080900 I 0.706
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.706
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.706
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.704
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.703
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.703
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.702
MYB76 Arabidopsis thaliana AT5G07700 I 0.702
Bo7g098590 Brassica oleracea Bo7g098590 I 0.698
Bra012961 Brassica rapa Bra012961 I 0.698
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.698
PK01174.1 Cannabis sativa PK01174.1 I 0.696
Bra008131 Brassica rapa Bra008131 I 0.695
TCM_014091 Theobroma cacao TCM_014091 I 0.695
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.687
MYB32 Arabidopsis thaliana AT4G34990 I 0.686
Bo7g117140 Brassica oleracea Bo7g117140 I 0.686
Bra017685 Brassica rapa Bra017685 I 0.686
PGSC0003DMG400024299 Solanum tuberosum PGSC0003DMG400024299 I 0.686
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.686
Solyc01g010910.1 Solanum lycopersicum Solyc01g010910.1 I 0.686
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.686
Bostr.7867s1358 Boechera stricta Bostr.7867s1358 I 0.686
Cagra.2350s0045 Capsella grandiflora Cagra.2350s0045 I 0.686
Carubv10005438m.g Capsella rubella Carubv10005438m.g I 0.686
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.686
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.686
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.686
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.685
Bra029311 Brassica rapa Bra029311 I 0.684
Bo1g006820 Brassica oleracea Bo1g006820 I 0.683
Bra011576 Brassica rapa Bra011576 I 0.683
MTR_6g012690 Medicago truncatula MTR_6g012690 I 0.681
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.681
PK26207.1 Cannabis sativa PK26207.1 I 0.681
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.680
GSMUA_Achr5G23240_001 Musa acuminata GSMUA_Achr5G23240_001 I 0.677
GSMUA_Achr6G02550_001 Musa acuminata GSMUA_Achr6G02550_001 I 0.677
GSMUA_Achr7G18410_001 Musa acuminata GSMUA_Achr7G18410_001 I 0.677
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.675
MYB49 Arabidopsis thaliana AT5G54230 D 0.672
Bo3g022210 Brassica oleracea Bo3g022210 I 0.672
Bra029033 Brassica rapa Bra029033 I 0.672
fgenesh1_pg.C_scaffold_8001466 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001466 I 0.672
fgenesh1_pm.C_scaffold_8001114 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001114 I 0.672
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.672
Pm019588 Prunus mume Pm019588 I 0.672
Bostr.26833s0846 Boechera stricta Bostr.26833s0846 I 0.672
Cagra.1629s0007 Capsella grandiflora Cagra.1629s0007 I 0.672
Carubv10026801m.g Capsella rubella Carubv10026801m.g I 0.672
Bo1g157620 Brassica oleracea Bo1g157620 I 0.668
Bra021483 Brassica rapa Bra021483 I 0.668
Thhalv10021048m.g Eutrema salsugineum Thhalv10021048m.g I 0.668
ATMYB16 Arabidopsis thaliana AT5G15310 I 0.665
Bo9g164230 Brassica oleracea Bo9g164230 I 0.665
Bra008705 Brassica rapa Bra008705 I 0.665
ATMYB16 Arabidopsis lyrata fgenesh2_kg.6__1513__AT5G15310.1 I 0.665
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.665
Bostr.2902s0269 Boechera stricta Bostr.2902s0269 I 0.665
Cagra.1036s0022 Capsella grandiflora Cagra.1036s0022 I 0.665
Carubv10001433m.g Capsella rubella Carubv10001433m.g I 0.665
Thhalv10014101m.g Eutrema salsugineum Thhalv10014101m.g I 0.665
orange1.1g036215m.g Citrus sinensis orange1.1g036215m.g I 0.663
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.662
Lus10026620.g Linum usitatissimum Lus10026620.g I 0.662
AMTR_s00010p00267100 Amborella trichopoda AMTR_s00010p00267100 I 0.661
BGIOSGA008493 Oryza indica BGIOSGA008493 I 0.661
BGIOSGA016547 Oryza indica BGIOSGA016547 I 0.661
BGIOSGA026935 Oryza indica BGIOSGA026935 I 0.661
BRADI5G12417 Brachypodium distachyon BRADI5G12417 I 0.661
F775_26161 Aegilops tauschii F775_26161 I 0.661
GLYMA13G05550 Glycine max GLYMA13G05550 I 0.661
GRMZM2G032655 Zea mays GRMZM2G032655 I 0.661
GRMZM2G079123 Zea mays GRMZM2G079123 I 0.661
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.661
LPERR08G12960 Leersia perrieri LPERR08G12960 I 0.661
OB02G29290 Oryza brachyantha OB02G29290 I 0.661
OB04G22310 Oryza brachyantha OB04G22310 I 0.661
OB08G23170 Oryza brachyantha OB08G23170 I 0.661
OBART02G21860 Oryza barthii OBART02G21860 I 0.661
OBART04G14990 Oryza barthii OBART04G14990 I 0.661
OBART08G15700 Oryza barthii OBART08G15700 I 0.661
OGLUM02G22040 Oryza glumaepatula OGLUM02G22040 I 0.661
OGLUM08G16450 Oryza glumaepatula OGLUM08G16450 I 0.661
OLONG_004507 Oryza longistaminata OLONG_004507 I 0.661
OMERI02G21400 Oryza meridionalis OMERI02G21400 I 0.661
OMERI08G12990 Oryza meridionalis OMERI08G12990 I 0.661
ONIVA02G24090 Oryza nivara ONIVA02G24090 I 0.661
ONIVA04G13130 Oryza nivara ONIVA04G13130 I 0.661
ONIVA08G16810 Oryza nivara ONIVA08G16810 I 0.661
OPUNC08G13770 Oryza punctata OPUNC08G13770 I 0.661
ORGLA04G0119800 Oryza glaberrima ORGLA04G0119800 I 0.661
ORGLA08G0137800 Oryza glaberrima ORGLA08G0137800 I 0.661
ORUFI02G22940 Oryza rufipogon ORUFI02G22940 I 0.661
ORUFI04G16390 Oryza rufipogon ORUFI04G16390 I 0.661
ORUFI08G17610 Oryza rufipogon ORUFI08G17610 I 0.661
OS04G0461000 Oryza sativa OS04G0461000 I 0.661
PGSC0003DMG400001339 Solanum tuberosum PGSC0003DMG400001339 I 0.661
POPTR_0017s12230 Populus trichocarpa POPTR_0017s12230 I 0.661
PRUPE_ppa006769mg Prunus persica PRUPE_ppa006769mg I 0.661
Si010352m.g Setaria italica Si010352m.g I 0.661
Si013994m.g Setaria italica Si013994m.g I 0.661
Solyc02g088190.2 Solanum lycopersicum Solyc02g088190.2 I 0.661
TCM_011659 Theobroma cacao TCM_011659 I 0.661
TCM_018639 Theobroma cacao TCM_018639 I 0.661
Traes_2DL_C964675DE Triticum aestivum Traes_2DL_C964675DE I 0.661
TRIUR3_25784 Triticum urartu TRIUR3_25784 I 0.661
VIT_01s0026g02770 Vitis vinifera VIT_01s0026g02770 I 0.661
VIT_14s0108g01080 Vitis vinifera VIT_14s0108g01080 I 0.661
Ca_10504 Cicer arietinum Ca_10504 I 0.661
Ca_22367 Cicer arietinum Ca_22367 I 0.661
Cla010483 Citrullus lanatus Cla010483 I 0.661
Pm015916 Prunus mume Pm015916 I 0.661
cassava1759.valid.m1 Manihot esculenta cassava1759.valid.m1 I 0.661
cassava360.valid.m1 Manihot esculenta cassava360.valid.m1 I 0.661
Cucsa.158170 Cucumis sativus Cucsa.158170 I 0.661
Ciclev10011948m.g Citrus clementina Ciclev10011948m.g I 0.661
Eucgr.I00012 Eucalyptus grandis Eucgr.I00012 I 0.661
Eucgr.J01362 Eucalyptus grandis Eucgr.J01362 I 0.661
evm.TU.supercontig_14.102 Carica papaya evm.TU.supercontig_14.102 I 0.661
gene04423-v1.0-hybrid Fragaria vesca gene04423-v1.0-hybrid I 0.661
Gorai.012G052500 Gossypium raimondii Gorai.012G052500 I 0.661
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.661
Lus10033003.g Linum usitatissimum Lus10033003.g I 0.661
MDP0000121476 Malus domestica MDP0000121476 I 0.661
MDP0000274301 Malus domestica MDP0000274301 I 0.661
MDP0000278681 Malus domestica MDP0000278681 I 0.661
MDP0000742771 Malus domestica MDP0000742771 I 0.661
orange1.1g016708m.g Citrus sinensis orange1.1g016708m.g I 0.661
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.661
Pavir.J33881 Panicum virgatum Pavir.J33881 I 0.661
SapurV1A.0438s0010 Salix purpurea SapurV1A.0438s0010 I 0.661
PK22137.1 Cannabis sativa PK22137.1 I 0.661
chr1.CM0141.320.nc Lotus japonicus chr1.CM0141.320.nc I 0.661
LjSGA_020545.1 Lotus japonicus LjSGA_020545.1 I 0.661