Cagra.4153s0023 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.4153s0023 T286143_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.892 0.989
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.666 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4153s0023.1.p Myb 9 56
Cagra.4153s0023.1.p Myb 62 107

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.909
MYB51 Arabidopsis thaliana AT1G18570 D 0.892
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.892
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.889
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.883
Bo8g104300 Brassica oleracea Bo8g104300 I 0.871
Bra031035 Brassica rapa Bra031035 I 0.862
Bo8g067910 Brassica oleracea Bo8g067910 I 0.860
Bo5g025570 Brassica oleracea Bo5g025570 I 0.850
Bra025666 Brassica rapa Bra025666 I 0.850
Bra016553 Brassica rapa Bra016553 I 0.839
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.801
MYB122 Arabidopsis thaliana AT1G74080 I 0.796
Bo9g014380 Brassica oleracea Bo9g014380 I 0.791
Bra035954 Brassica rapa Bra035954 I 0.782
Bo6g118350 Brassica oleracea Bo6g118350 I 0.777
Bra015939 Brassica rapa Bra015939 I 0.777
MYB34 Arabidopsis thaliana AT5G60890 I 0.772
Bo7g098110 Brassica oleracea Bo7g098110 I 0.772
Bra013000 Brassica rapa Bra013000 I 0.772
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.772
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.772
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.772
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.772
Bo2g080900 Brassica oleracea Bo2g080900 I 0.762
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.757
Bo2g161180 Brassica oleracea Bo2g161180 I 0.752
Bra008131 Brassica rapa Bra008131 I 0.752
Bra029349 Brassica rapa Bra029349 I 0.752
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.751
Bra005949 Brassica rapa Bra005949 I 0.737
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.733
MYB29 Arabidopsis thaliana AT5G07690 I 0.729
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.729
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.729
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.729
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.729
Bra029350 Brassica rapa Bra029350 I 0.726
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.725
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.725
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.725
Bo9g175680 Brassica oleracea Bo9g175680 I 0.719
MYB28 Arabidopsis thaliana AT5G61420 I 0.718
Bo2g161590 Brassica oleracea Bo2g161590 I 0.718
Bo9g014610 Brassica oleracea Bo9g014610 I 0.718
Bra035929 Brassica rapa Bra035929 I 0.718
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.718
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.718
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.718
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.718
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.718
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.717
PK14811.1 Cannabis sativa PK14811.1 I 0.717
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.714
PK27708.1 Cannabis sativa PK27708.1 I 0.713
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.712
MYB76 Arabidopsis thaliana AT5G07700 I 0.712
Bo2g161170 Brassica oleracea Bo2g161170 I 0.708
Bo7g098590 Brassica oleracea Bo7g098590 I 0.708
Bra012961 Brassica rapa Bra012961 I 0.708
Bo3g004500 Brassica oleracea Bo3g004500 I 0.706
Bostr.3288s0058 Boechera stricta Bostr.3288s0058 I 0.706
Eucgr.I00012 Eucalyptus grandis Eucgr.I00012 I 0.704
gene12738-v1.0-hybrid Fragaria vesca gene12738-v1.0-hybrid I 0.696
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.695
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.695
Bra029311 Brassica rapa Bra029311 I 0.694
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.691
GSMUA_Achr6G25420_001 Musa acuminata GSMUA_Achr6G25420_001 I 0.691
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.691
Eucgr.C03554 Eucalyptus grandis Eucgr.C03554 I 0.688
AMTR_s00024p00250970 Amborella trichopoda AMTR_s00024p00250970 I 0.684
MYB6 Arabidopsis thaliana AT4G09460 I 0.684
BGIOSGA018002 Oryza indica BGIOSGA018002 I 0.684
Bo3g044210 Brassica oleracea Bo3g044210 I 0.684
Bra000680 Brassica rapa Bra000680 I 0.684
BRADI2G24400 Brachypodium distachyon BRADI2G24400 I 0.684
AtMYB6 Arabidopsis lyrata fgenesh2_kg.6__2929__AT4G09460.1 I 0.684
MLOC_71041 Hordeum vulgare MLOC_71041 I 0.684
ORUFI05G18670 Oryza rufipogon ORUFI05G18670 I 0.684
OS05G0429900 Oryza sativa OS05G0429900 I 0.684
POPTR_0013s11360 Populus trichocarpa POPTR_0013s11360 I 0.684
cassava16245.m1 Manihot esculenta cassava16245.m1 I 0.684
cassava35464.valid.m1 Manihot esculenta cassava35464.valid.m1 I 0.684
mgf003913m Mimulus guttatus mgf003913m I 0.684
Bostr.25463s0384 Boechera stricta Bostr.25463s0384 I 0.684
Carubv10001860m.g Capsella rubella Carubv10001860m.g I 0.684
Carubv10012451m.g Capsella rubella Carubv10012451m.g I 0.684
Ciclev10002068m.g Citrus clementina Ciclev10002068m.g I 0.684
Lus10000411.g Linum usitatissimum Lus10000411.g I 0.684
Lus10016948.g Linum usitatissimum Lus10016948.g I 0.684
orange1.1g023056m.g Citrus sinensis orange1.1g023056m.g I 0.684
SapurV1A.0277s0120 Salix purpurea SapurV1A.0277s0120 I 0.684
SapurV1A.1985s0010 Salix purpurea SapurV1A.1985s0010 I 0.684
Thhalv10028861m.g Eutrema salsugineum Thhalv10028861m.g I 0.684
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.682
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.682
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.682
BGIOSGA004902 Oryza indica BGIOSGA004902 I 0.681
Bo7g117140 Brassica oleracea Bo7g117140 I 0.681
Bra017685 Brassica rapa Bra017685 I 0.681
F775_17298 Aegilops tauschii F775_17298 I 0.681
GRMZM2G405094 Zea mays GRMZM2G405094 I 0.681
MLOC_69570 Hordeum vulgare MLOC_69570 I 0.681
OB01G47670 Oryza brachyantha OB01G47670 I 0.681
ORGLA01G0328800 Oryza glaberrima ORGLA01G0328800 I 0.681
OS01G0874300 Oryza sativa OS01G0874300 I 0.681
Sb03g041360 Sorghum bicolor Sb03g041360 I 0.681
TRAES3BF044400110CFD_g Triticum aestivum TRAES3BF044400110CFD_g I 0.681
TRIUR3_22555 Triticum urartu TRIUR3_22555 I 0.681
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.681
Pavir.Ea03682 Panicum virgatum Pavir.Ea03682 I 0.681
Pavir.J01502 Panicum virgatum Pavir.J01502 I 0.681
Cagra.9781s0007 Capsella grandiflora Cagra.9781s0007 I 0.680
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I 0.679
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I 0.679
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.679
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.678
MYB8 Arabidopsis thaliana AT1G35515 I 0.676
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.676
TCM_014091 Theobroma cacao TCM_014091 I 0.676
F775_31191 Aegilops tauschii F775_31191 I 0.674
GRMZM2G077789 Zea mays GRMZM2G077789 I 0.674
GRMZM2G431156 Zea mays GRMZM2G431156 I 0.674
POPTR_0004s14510 Populus trichocarpa POPTR_0004s14510 I 0.674
POPTR_0019s00750 Populus trichocarpa POPTR_0019s00750 I 0.674
Traes_5AL_56F30392D Triticum aestivum Traes_5AL_56F30392D I 0.674
Traes_5BL_AED68C680 Triticum aestivum Traes_5BL_AED68C680 I 0.674
Traes_5DL_1868E2A6C Triticum aestivum Traes_5DL_1868E2A6C I 0.674
TRIUR3_11890 Triticum urartu TRIUR3_11890 I 0.674
Cagra.1383s0046 Capsella grandiflora Cagra.1383s0046 I 0.674
Carubv10005426m.g Capsella rubella Carubv10005426m.g I 0.674
Ciclev10028908m.g Citrus clementina Ciclev10028908m.g I 0.674
Lus10014129.g Linum usitatissimum Lus10014129.g I 0.674
MDP0000574942 Malus domestica MDP0000574942 I 0.674
orange1.1g021503m.g Citrus sinensis orange1.1g021503m.g I 0.674
SapurV1A.0591s0010 Salix purpurea SapurV1A.0591s0010 I 0.674
SapurV1A.1127s0040 Salix purpurea SapurV1A.1127s0040 I 0.674
TCM_012631 Theobroma cacao TCM_012631 I 0.673
MYB32 Arabidopsis thaliana AT4G34990 I 0.672
Bo1g006820 Brassica oleracea Bo1g006820 I 0.672
Bra011576 Brassica rapa Bra011576 I 0.672
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.672
Bostr.7867s1358 Boechera stricta Bostr.7867s1358 I 0.672
Cagra.2350s0045 Capsella grandiflora Cagra.2350s0045 I 0.672
Carubv10005438m.g Capsella rubella Carubv10005438m.g I 0.672
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.672
GSMUA_Achr5G17010_001 Musa acuminata GSMUA_Achr5G17010_001 I 0.671
TCM_000174 Theobroma cacao TCM_000174 I 0.670
PK01174.1 Cannabis sativa PK01174.1 I 0.670
Solyc12g049300.1 Solanum lycopersicum Solyc12g049300.1 I 0.669
AMTR_s00139p00079430 Amborella trichopoda AMTR_s00139p00079430 I 0.666
MYB3 Arabidopsis thaliana AT1G22640 D 0.666
BGIOSGA034924 Oryza indica BGIOSGA034924 I 0.666
Bo7g057770 Brassica oleracea Bo7g057770 I 0.666
Bo8g071580 Brassica oleracea Bo8g071580 I 0.666
Bra012337 Brassica rapa Bra012337 I 0.666
ATMYB3 Arabidopsis lyrata fgenesh2_kg.1__2457__AT1G22640.1 I 0.666
LPERR11G04310 Leersia perrieri LPERR11G04310 I 0.666
MLOC_65957 Hordeum vulgare MLOC_65957 I 0.666
OB11G14080 Oryza brachyantha OB11G14080 I 0.666
OBART11G04950 Oryza barthii OBART11G04950 I 0.666
OGLUM11G04790 Oryza glumaepatula OGLUM11G04790 I 0.666
ONIVA11G05280 Oryza nivara ONIVA11G05280 I 0.666
OPUNC11G04750 Oryza punctata OPUNC11G04750 I 0.666
ORGLA11G0047500 Oryza glaberrima ORGLA11G0047500 I 0.666
ORUFI11G04860 Oryza rufipogon ORUFI11G04860 I 0.666
OS11G0180900 Oryza sativa OS11G0180900 I 0.666
PGSC0003DMG400031317 Solanum tuberosum PGSC0003DMG400031317 I 0.666
POPTR_0019s11090 Populus trichocarpa POPTR_0019s11090 I 0.666
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.666
Solyc06g065100.2 Solanum lycopersicum Solyc06g065100.2 I 0.666
TCM_036404 Theobroma cacao TCM_036404 I 0.666
Traes_4AL_CC5803BED Triticum aestivum Traes_4AL_CC5803BED I 0.666
Traes_4BS_6253482BD Triticum aestivum Traes_4BS_6253482BD I 0.666
Traes_4DS_7BFAC49C2 Triticum aestivum Traes_4DS_7BFAC49C2 I 0.666
Cla012721 Citrullus lanatus Cla012721 I 0.666
Pm004199 Prunus mume Pm004199 I 0.666
28154.m000040 Ricinus communis 28154.m000040 I 0.666
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.666
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I 0.666
Cagra.0114s0040 Capsella grandiflora Cagra.0114s0040 I 0.666
Carubv10009761m.g Capsella rubella Carubv10009761m.g I 0.666
Eucgr.F02583 Eucalyptus grandis Eucgr.F02583 I 0.666
gene25685-v1.0-hybrid Fragaria vesca gene25685-v1.0-hybrid I 0.666
Gorai.009G263200 Gossypium raimondii Gorai.009G263200 I 0.666
Gorai.009G288900 Gossypium raimondii Gorai.009G288900 I 0.666
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.666
MDP0000872821 Malus domestica MDP0000872821 I 0.666
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.666
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.666
Thhalv10008456m.g Eutrema salsugineum Thhalv10008456m.g I 0.666
PK21058.1 Cannabis sativa PK21058.1 I 0.666
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.664
GSMUA_Achr3G22200_001 Musa acuminata GSMUA_Achr3G22200_001 I 0.664
Bostr.12659s0116 Boechera stricta Bostr.12659s0116 I 0.663
Eucgr.B00865 Eucalyptus grandis Eucgr.B00865 I 0.663
Lus10001548.g Linum usitatissimum Lus10001548.g I 0.663
Lus10009448.g Linum usitatissimum Lus10009448.g I 0.663
OB12G14430 Oryza brachyantha OB12G14430 I 0.662
OGLUM12G05340 Oryza glumaepatula OGLUM12G05340 I 0.662
ONIVA12G04230 Oryza nivara ONIVA12G04230 I 0.662
OPUNC12G04520 Oryza punctata OPUNC12G04520 I 0.662
ORUFI12G05190 Oryza rufipogon ORUFI12G05190 I 0.662
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.662
GSMUA_Achr10G04590_001 Musa acuminata GSMUA_Achr10G04590_001 I 0.661
POPTR_0008s08870 Populus trichocarpa POPTR_0008s08870 I 0.661
POPTR_0008s08920 Populus trichocarpa POPTR_0008s08920 I 0.661
Pm006464 Prunus mume Pm006464 I 0.661
SapurV1A.0801s0120 Salix purpurea SapurV1A.0801s0120 I 0.661