AT2G40350 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT2G40350 T000460_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB2C
M00846_2.00
Arabidopsis thaliana
NNRCCGNNN

NNNCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DREB2C
0.703 0.898
DREB2C
M01049_2.00
Arabidopsis thaliana
VRCCGVCW

WGBCGGYB
PBM
Sullivan et al.(2014)
pTH9747
0.703 0.898
DREB2C
M06611_2.00
Arabidopsis thaliana
DCCDCCRCCDHYDCCRCCDCM

KGHGGYGGHRDHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
ERF48_col_a
0.703 0.898
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH

DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.681 0.735
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH

DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.677 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G40350.1 AP2 65 116
AT2G40350.2 AP2 72 123

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.775
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.733
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.723
Bra017011 Brassica rapa Bra017011 I 0.708
Bo4g190040 Brassica oleracea Bo4g190040 I 0.708
DREB2C Arabidopsis thaliana AT2G40340 D 0.703
29729.m002292 Ricinus communis 29729.m002292 I 0.703
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.696
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.696
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.693
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.693
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.693
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.689
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.687
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.686
Pm003634 Prunus mume Pm003634 I 0.685
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.684
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.683
MDP0000250924 Malus domestica MDP0000250924 I 0.682
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.681
DREB2G Arabidopsis thaliana AT5G18450 D 0.681
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.681
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.681
Bo9g155940 Brassica oleracea Bo9g155940 I 0.681
Bra002159 Brassica rapa Bra002159 I 0.681
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.681
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.680
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.680
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.680
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.678
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.678
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.678
PK07402.1 Cannabis sativa PK07402.1 D 0.677
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.677
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.677
MDP0000250927 Malus domestica MDP0000250927 I 0.677