CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT2G40350
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT2G40350
T000460_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB2C
M00846_2.00
Arabidopsis thaliana
NNRCCGNNN
NNNCGGYNN
PBM
Franco-Zorrilla et al.(2014)
DREB2C
0.703
0.898
DREB2C
M01049_2.00
Arabidopsis thaliana
VRCCGVCW
WGBCGGYB
PBM
Sullivan et al.(2014)
pTH9747
0.703
0.898
DREB2C
M06611_2.00
Arabidopsis thaliana
DCCDCCRCCDHYDCCRCCDCM
KGHGGYGGHRDHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
ERF48_col_a
0.703
0.898
DREB2G
M06662_2.00
Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH
Dap-seq
OMalley et al.(2016)
At5g18450_col_a
0.681
0.735
PK07402.1
M01097_2.00
Cannabis sativa
NVRCCGMCH
DGKCGGYBN
PBM
Lambert et al.(2019)
pTH11436
0.677
0.776
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G40350.1
AP2
65
116
CDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQ
AT2G40350.2
AP2
72
123
CDYTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQ
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
DREB2C
Arabidopsis lyrata
scaffold_402826.1
I
0.775
Thhalv10016913m.g
Eutrema salsugineum
Thhalv10016913m.g
I
0.733
Bostr.23794s0027
Boechera stricta
Bostr.23794s0027
I
0.723
Bra017011
Brassica rapa
Bra017011
I
0.708
Bo4g190040
Brassica oleracea
Bo4g190040
I
0.708
DREB2C
Arabidopsis thaliana
AT2G40340
D
0.703
29729.m002292
Ricinus communis
29729.m002292
I
0.703
POPTR_0010s19100
Populus trichocarpa
POPTR_0010s19100
I
0.696
cassava19475.valid.m1
Manihot esculenta
cassava19475.valid.m1
I
0.696
orange1.1g019546m.g
Citrus sinensis
orange1.1g019546m.g
I
0.693
evm.TU.supercontig_19.121
Carica papaya
evm.TU.supercontig_19.121
I
0.693
Ciclev10032029m.g
Citrus clementina
Ciclev10032029m.g
I
0.693
GSMUA_Achr3G00320_001
Musa acuminata
GSMUA_Achr3G00320_001
I
0.689
PDK_20s1493381g003
Phoenix dactylifera
PDK_20s1493381g003
I
0.687
POPTR_0008s07360
Populus trichocarpa
POPTR_0008s07360
I
0.686
Pm003634
Prunus mume
Pm003634
I
0.685
Eucgr.K02952
Eucalyptus grandis
Eucgr.K02952
I
0.684
PRUPE_ppa026176mg
Prunus persica
PRUPE_ppa026176mg
I
0.683
MDP0000250924
Malus domestica
MDP0000250924
I
0.682
Thhalv10015907m.g
Eutrema salsugineum
Thhalv10015907m.g
I
0.681
DREB2G
Arabidopsis thaliana
AT5G18450
D
0.681
Bostr.26527s0367
Boechera stricta
Bostr.26527s0367
I
0.681
scaffold_601912.1
Arabidopsis lyrata
scaffold_601912.1
I
0.681
Bo9g155940
Brassica oleracea
Bo9g155940
I
0.681
Bra002159
Brassica rapa
Bra002159
I
0.681
GRMZM2G156737
Zea mays
GRMZM2G156737
I
0.681
SapurV1A.1420s0050
Salix purpurea
SapurV1A.1420s0050
I
0.680
SapurV1A.0673s0120
Salix purpurea
SapurV1A.0673s0120
I
0.680
Cucsa.136780
Cucumis sativus
Cucsa.136780
I
0.680
VIT_13s0067g01960
Vitis vinifera
VIT_13s0067g01960
I
0.678
GSMUA_AchrUn_randomG08690_001
Musa acuminata
GSMUA_AchrUn_randomG08690_001
I
0.678
VIT_18s0001g13320
Vitis vinifera
VIT_18s0001g13320
I
0.678
PK07402.1
Cannabis sativa
PK07402.1
D
0.677
SapurV1A.2268s0010
Salix purpurea
SapurV1A.2268s0010
I
0.677
SapurV1A.1286s0030
Salix purpurea
SapurV1A.1286s0030
I
0.677
MDP0000250927
Malus domestica
MDP0000250927
I
0.677