PGSC0003DMG400003706 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400003706 T004345_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.693 0.837
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.693 0.837
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.693 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400009506 AP2 29 80

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.815
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.752
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.752
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.743
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.741
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.734
Cla022803 Citrullus lanatus Cla022803 I 0.734
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.731
MDP0000250924 Malus domestica MDP0000250924 I 0.720
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.720
Cla021113 Citrullus lanatus Cla021113 I 0.713
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.711
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.710
Pm006274 Prunus mume Pm006274 I 0.710
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.710
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.710
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.708
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.708
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.708
30170.m014115 Ricinus communis 30170.m014115 I 0.708
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.708
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.706
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.706
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.706
TCM_034132 Theobroma cacao TCM_034132 I 0.706
mgf024545m Mimulus guttatus mgf024545m I 0.705
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.702
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.700
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.699
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.699
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.697
Ca_10770 Cicer arietinum Ca_10770 I 0.697
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.697
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.697
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.697
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.696
TCM_026121 Theobroma cacao TCM_026121 I 0.696
Bra008200 Brassica rapa Bra008200 I 0.695
Bo2g083920 Brassica oleracea Bo2g083920 I 0.695
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.693
Bo6g119660 Brassica oleracea Bo6g119660 I 0.693
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.693
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.693
Bra015840 Brassica rapa Bra015840 I 0.693
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.693
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.693
DREB2D Arabidopsis thaliana AT1G75490 D 0.693
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.691
MDP0000141335 Malus domestica MDP0000141335 I 0.691
MDP0000295902 Malus domestica MDP0000295902 I 0.691
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.685
MDP0000250927 Malus domestica MDP0000250927 I 0.685
Bra003752 Brassica rapa Bra003752 I 0.680
Bo6g086320 Brassica oleracea Bo6g086320 I 0.680
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.679
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.679
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.678