Bra015840 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra015840 T001093_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.803 1.000
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.803 1.000
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.803 1.000
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.700 0.837
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.683 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015840.1-P AP2 40 91

Links

Other AP2 family TFs
Other Brassica rapa TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.803
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.803
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.803
Bo6g119660 Brassica oleracea Bo6g119660 I 0.803
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.803
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.803
DREB2D Arabidopsis thaliana AT1G75490 D 0.803
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.796
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.796
Bo2g083920 Brassica oleracea Bo2g083920 I 0.795
Bra008200 Brassica rapa Bra008200 I 0.795
Bra003752 Brassica rapa Bra003752 I 0.790
Bo6g086320 Brassica oleracea Bo6g086320 I 0.790
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.786
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.784
30170.m014115 Ricinus communis 30170.m014115 I 0.784
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.784
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.784
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.783
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.782
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.780
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.780
Cla021113 Citrullus lanatus Cla021113 I 0.778
Pm006274 Prunus mume Pm006274 I 0.778
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.778
mgf024545m Mimulus guttatus mgf024545m I 0.776
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.775
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.775
MDP0000250924 Malus domestica MDP0000250924 I 0.774
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.773
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.770
TCM_034132 Theobroma cacao TCM_034132 I 0.770
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.769
MDP0000141335 Malus domestica MDP0000141335 I 0.768
MDP0000295902 Malus domestica MDP0000295902 I 0.768
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.765
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.765
Ca_10770 Cicer arietinum Ca_10770 I 0.765
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.765
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.765
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.759
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.753
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.753
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.750
MDP0000250927 Malus domestica MDP0000250927 I 0.746
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.741
mgf017629m Mimulus guttatus mgf017629m I 0.738
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.737
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.737
Cla022803 Citrullus lanatus Cla022803 I 0.737
Pm003634 Prunus mume Pm003634 I 0.734
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.732
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.731
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.731
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.726
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.726
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.724
Bo9g155940 Brassica oleracea Bo9g155940 I 0.724
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.724
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.724
DREB2G Arabidopsis thaliana AT5G18450 D 0.724
Bra002159 Brassica rapa Bra002159 I 0.724
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.723
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.723
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.720
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.719
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.719
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.715
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.713
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.712
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.709
TCM_026121 Theobroma cacao TCM_026121 I 0.707
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.706
29680.m001737 Ricinus communis 29680.m001737 I 0.706
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.705
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.705
Bo2g016490 Brassica oleracea Bo2g016490 I 0.704
Bra023674 Brassica rapa Bra023674 I 0.704
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.704
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.702
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.702
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.700
PK07402.1 Cannabis sativa PK07402.1 D 0.700
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.698
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.696
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.696
Cla006713 Citrullus lanatus Cla006713 I 0.695
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.694
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.694
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.693
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.693
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.693
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.693
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.693
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.693
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.692
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.692
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.692
MDP0000223609 Malus domestica MDP0000223609 I 0.691
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
Bo3g013160 Brassica oleracea Bo3g013160 I 0.690
Bra006460 Brassica rapa Bra006460 I 0.690
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.690
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.687
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.687
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.687
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.686
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.686
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.685
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.684
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.683
PK08602.1 Cannabis sativa PK08602.1 D 0.683
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.682
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.682
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.682
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.682
OB08G30790 Oryza brachyantha OB08G30790 I 0.682
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.682
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.682
DREB2C Oryza sativa OS08G0565200 I 0.682
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.682
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.682
29729.m002292 Ricinus communis 29729.m002292 I 0.680
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.680
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.680
OBART03G05550 Oryza barthii OBART03G05550 I 0.679
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.679
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.679
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.679
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.679
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.679
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.679
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.679
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.679
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.679
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.679
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.679
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.679
DREB2E Oryza sativa OS03G0174400 I 0.679
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.679
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.679
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.679
MDP0000153866 Malus domestica MDP0000153866 I 0.679
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.679
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.679
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.678
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.678
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.678
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.678
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.678
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.678
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.678
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.678
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.677