Lus10010632.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10010632.g T008773_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.741 0.918
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.741 0.918
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.741 0.918
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.677 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10010632 AP2 43 94

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.799
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.799
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.794
Cla022803 Citrullus lanatus Cla022803 I 0.783
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.783
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.777
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.754
30170.m014115 Ricinus communis 30170.m014115 I 0.752
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.752
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.752
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.752
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.751
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.750
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.749
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.748
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.746
Cla021113 Citrullus lanatus Cla021113 I 0.746
Pm006274 Prunus mume Pm006274 I 0.746
mgf024545m Mimulus guttatus mgf024545m I 0.745
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.744
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.744
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.741
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.741
Bra015840 Brassica rapa Bra015840 I 0.741
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.741
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.741
DREB2D Arabidopsis thaliana AT1G75490 D 0.741
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.741
Bo6g119660 Brassica oleracea Bo6g119660 I 0.741
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.740
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.739
TCM_034132 Theobroma cacao TCM_034132 I 0.738
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.738
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.738
TCM_026121 Theobroma cacao TCM_026121 I 0.735
MDP0000250924 Malus domestica MDP0000250924 I 0.734
Ca_10770 Cicer arietinum Ca_10770 I 0.733
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.733
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.733
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.733
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.733
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.733
Bo2g083920 Brassica oleracea Bo2g083920 I 0.732
Bra008200 Brassica rapa Bra008200 I 0.732
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.731
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.731
MDP0000141335 Malus domestica MDP0000141335 I 0.728
MDP0000295902 Malus domestica MDP0000295902 I 0.728
Bo6g086320 Brassica oleracea Bo6g086320 I 0.727
Bra003752 Brassica rapa Bra003752 I 0.727
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.726
OPUNC08G21890 Oryza punctata OPUNC08G21890 I 0.718
ORGLA08G0193700 Oryza glaberrima ORGLA08G0193700 I 0.718
ORUFI08G26490 Oryza rufipogon ORUFI08G26490 I 0.718
ONIVA09G01190 Oryza nivara ONIVA09G01190 I 0.718
OB08G30790 Oryza brachyantha OB08G30790 I 0.718
BGIOSGA026461 Oryza indica BGIOSGA026461 I 0.718
DREB2C Oryza sativa OS08G0565200 I 0.718
BGIOSGA026464 Oryza indica BGIOSGA026464 I 0.718
OGLUM08G25470 Oryza glumaepatula OGLUM08G25470 I 0.718
OMERI08G18820 Oryza meridionalis OMERI08G18820 I 0.718
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.715
LPERR08G12790 Leersia perrieri LPERR08G12790 I 0.713
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.709
Traes_2BL_B397F2CE3 Triticum aestivum Traes_2BL_B397F2CE3 I 0.708
Pm018989 Prunus mume Pm018989 I 0.707
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.707
Si024059m.g Setaria italica Si024059m.g I 0.706
F775_02345 Aegilops tauschii F775_02345 I 0.706
MLOC_66580 Hordeum vulgare MLOC_66580 I 0.706
Pavir.J22169 Panicum virgatum Pavir.J22169 I 0.706
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I 0.706
Traes_2DL_B32203C91 Triticum aestivum Traes_2DL_B32203C91 I 0.706
Pavir.J25464 Panicum virgatum Pavir.J25464 I 0.706
BRADI3G12680 Brachypodium distachyon BRADI3G12680 I 0.704
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.703
LPERR08G20650 Leersia perrieri LPERR08G20650 I 0.703
MLOC_12223 Hordeum vulgare MLOC_12223 I 0.703
MDP0000250927 Malus domestica MDP0000250927 I 0.702
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.700
Pm003634 Prunus mume Pm003634 I 0.700
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.698
MDP0000446783 Malus domestica MDP0000446783 I 0.698
MDP0000147009 Malus domestica MDP0000147009 I 0.698
MDP0000165880 Malus domestica MDP0000165880 I 0.698
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I 0.692
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.692
F775_01779 Aegilops tauschii F775_01779 I 0.691
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.688
mgf017629m Mimulus guttatus mgf017629m I 0.688
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.688
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.688
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.687
Traes_2AL_3FB37A3E7 Triticum aestivum Traes_2AL_3FB37A3E7 I 0.686
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.683
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.683
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.683
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.683
F775_32062 Aegilops tauschii F775_32062 I 0.683
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.683
SELMODRAFT_38498 Selaginella moellendorffii SELMODRAFT_38498 N 0.681
SELMODRAFT_38500 Selaginella moellendorffii SELMODRAFT_38500 N 0.681
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.679
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.678
TRIUR3_03342 Triticum urartu TRIUR3_03342 N 0.678
GRMZM2G006745 Zea mays GRMZM2G006745 I 0.677
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.677
Sb09g016150 Sorghum bicolor Sb09g016150 I 0.677
Si022619m.g Setaria italica Si022619m.g I 0.677
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I 0.677
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I 0.677
Q1ESI9_MAIZE Zea mays Q1ESI9_MAIZE D 0.677