Cla021113 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla021113 T006515_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.778 0.918
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.778 0.918
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.778 0.918
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.722 0.837
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.688 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla021113 AP2 12 63

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.342750 Cucumis sativus Cucsa.342750 I 0.803
Pm006274 Prunus mume Pm006274 I 0.803
evm.TU.supercontig_99.20 Carica papaya evm.TU.supercontig_99.20 I 0.801
Gorai.009G197800 Gossypium raimondii Gorai.009G197800 I 0.800
Gorai.005G110100 Gossypium raimondii Gorai.005G110100 I 0.800
30170.m014115 Ricinus communis 30170.m014115 I 0.798
orange1.1g036655m.g Citrus sinensis orange1.1g036655m.g I 0.798
Ciclev10002280m.g Citrus clementina Ciclev10002280m.g I 0.798
cassava41240.m1 Manihot esculenta cassava41240.m1 I 0.798
cassava45031.m1 Manihot esculenta cassava45031.m1 I 0.797
POPTR_0002s03090 Populus trichocarpa POPTR_0002s03090 I 0.796
PRUPE_ppa023248mg Prunus persica PRUPE_ppa023248mg I 0.795
POPTR_0005s25470 Populus trichocarpa POPTR_0005s25470 I 0.794
TCM_034132 Theobroma cacao TCM_034132 I 0.794
mgf024545m Mimulus guttatus mgf024545m I 0.791
MDP0000250924 Malus domestica MDP0000250924 I 0.791
GLYMA06G03110 Glycine max GLYMA06G03110 I 0.790
LjSGA_063888.1 Lotus japonicus LjSGA_063888.1 I 0.790
Ca_10770 Cicer arietinum Ca_10770 I 0.790
MTR_1g023170 Medicago truncatula MTR_1g023170 I 0.790
GLYMA04G03070 Glycine max GLYMA04G03070 I 0.790
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I 0.786
GLYMA17G37350 Glycine max GLYMA17G37350 I 0.785
GLYMA14G07620 Glycine max GLYMA14G07620 I 0.785
SapurV1A.0188s0060 Salix purpurea SapurV1A.0188s0060 I 0.784
gene08479-v1.0-hybrid Fragaria vesca gene08479-v1.0-hybrid I 0.782
Bo2g083920 Brassica oleracea Bo2g083920 I 0.780
Bra008200 Brassica rapa Bra008200 I 0.780
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I 0.778
Bo6g119660 Brassica oleracea Bo6g119660 I 0.778
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I 0.778
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I 0.778
DREB2D Arabidopsis thaliana AT1G75490 D 0.778
Bra015840 Brassica rapa Bra015840 I 0.778
Carubv10020960m.g Capsella rubella Carubv10020960m.g I 0.778
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I 0.778
MDP0000141335 Malus domestica MDP0000141335 I 0.776
MDP0000295902 Malus domestica MDP0000295902 I 0.776
Lus10024298.g Linum usitatissimum Lus10024298.g I 0.767
Lus10006127.g Linum usitatissimum Lus10006127.g I 0.767
Bra003752 Brassica rapa Bra003752 I 0.765
Bo6g086320 Brassica oleracea Bo6g086320 I 0.765
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I 0.763
MDP0000250927 Malus domestica MDP0000250927 I 0.758
chr1.CM0195.510.nd Lotus japonicus chr1.CM0195.510.nd I 0.756
Eucgr.F01607 Eucalyptus grandis Eucgr.F01607 I 0.751
Cla022803 Citrullus lanatus Cla022803 I 0.749
Cucsa.231820 Cucumis sativus Cucsa.231820 I 0.749
Lus10010632.g Linum usitatissimum Lus10010632.g I 0.746
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I 0.745
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I 0.736
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.735
Pm003634 Prunus mume Pm003634 I 0.731
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.728
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.728
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.725
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.724
mgf017629m Mimulus guttatus mgf017629m I 0.723
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.722
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.722
29680.m001737 Ricinus communis 29680.m001737 I 0.722
Bra002159 Brassica rapa Bra002159 I 0.722
Bo9g155940 Brassica oleracea Bo9g155940 I 0.722
DREB2G Arabidopsis thaliana AT5G18450 D 0.722
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.722
MTR_3g112440 Medicago truncatula MTR_3g112440 I 0.720
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.717
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.717
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.717
Solyc04g080910.1 Solanum lycopersicum Solyc04g080910.1 I 0.713
PGSC0003DMG400003706 Solanum tuberosum PGSC0003DMG400003706 I 0.713
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.711
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.710
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.710
MDP0000223609 Malus domestica MDP0000223609 I 0.707
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.705
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.705
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.702
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I 0.702
Bra023674 Brassica rapa Bra023674 I 0.702
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.702
Bo2g016490 Brassica oleracea Bo2g016490 I 0.702
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.700
Ciclev10022244m.g Citrus clementina Ciclev10022244m.g I 0.700
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.700
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.699
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.696
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.696
TCM_026121 Theobroma cacao TCM_026121 I 0.695
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.694
Cla006713 Citrullus lanatus Cla006713 I 0.693
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.692
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.692
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.691
GRMZM2G028386 Zea mays GRMZM2G028386 I 0.691
GRMZM2G156737 Zea mays GRMZM2G156737 I 0.691
MDP0000153866 Malus domestica MDP0000153866 I 0.690
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.690
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.690
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.690
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.690
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.690
29729.m002292 Ricinus communis 29729.m002292 I 0.688
PK07402.1 Cannabis sativa PK07402.1 D 0.688
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.686
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.685
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.684
Sb07g023575 Sorghum bicolor Sb07g023575 I 0.683
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.681
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.681
MDP0000293996 Malus domestica MDP0000293996 N 0.681
Bra006460 Brassica rapa Bra006460 I 0.680
Bo3g013160 Brassica oleracea Bo3g013160 I 0.680
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.679
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.679
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.677