CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g046898m.g
(
Citrus sinensis
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
orange1.1g046898m.g
T010624_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g046898m
AP2
47
96
VKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSAAIKIRGG
orange1.1g046898m
B3
172
281
FQKELTPSDVGKLNRLVIPKKYAVKYFPFISENAGENAINGGVDDMELVFFDKLMRPWKFRYCFWRSSQSYVFTRGWNRFVKEKKLKEKDIITFYACECANGAKEGQNFF
Links
Other
AP2,B3
family TFs
Other
Citrus sinensis
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10017535m.g
Citrus clementina
Ciclev10017535m.g
N
1.000
29650.m000279
Ricinus communis
29650.m000279
N
0.817
Gorai.013G249100
Gossypium raimondii
Gorai.013G249100
N
0.810
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.796
Pm028198
Prunus mume
Pm028198
N
0.782
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.782
Cla019009
Citrullus lanatus
Cla019009
N
0.782
PRUPE_ppa026651mg
Prunus persica
PRUPE_ppa026651mg
N
0.782
gene24427-v1.0-hybrid
Fragaria vesca
gene24427-v1.0-hybrid
N
0.775
cassava14279.m1
Manihot esculenta
cassava14279.m1
N
0.771
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.761
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.761
evm.TU.contig_32277
Carica papaya
evm.TU.contig_32277
N
0.760
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.754
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.754
cassava27051.m1
Manihot esculenta
cassava27051.m1
N
0.746
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.746
SapurV1A.0009s0070
Salix purpurea
SapurV1A.0009s0070
N
0.739
PK28088.1
Cannabis sativa
PK28088.1
N
0.739
Bo3g179890
Brassica oleracea
Bo3g179890
N
0.732
SapurV1A.2134s0020
Salix purpurea
SapurV1A.2134s0020
N
0.732
Bra014282
Brassica rapa
Bra014282
N
0.725