CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G249100
(
Gossypium raimondii
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
Gorai.013G249100
T010603_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G249100.1
AP2
46
95
PKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSESEAAMAYDSAAVKLRSG
Gorai.013G249100.1
B3
172
282
FQKELTPSDVGKLNRLVIPKKYAVKYFPHICETDRQVSAAGGGVEDIELVFYDKLMVTWKFRYCYWKSSQSFVFTRGWSRFVKEKKLNEKDTVTFYSCECSGEDQNGKSFF
Links
Other
AP2,B3
family TFs
Other
Gossypium raimondii
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g046898m.g
Citrus sinensis
orange1.1g046898m.g
N
0.810
Ciclev10017535m.g
Citrus clementina
Ciclev10017535m.g
N
0.810
Pm028198
Prunus mume
Pm028198
N
0.796
PRUPE_ppa026651mg
Prunus persica
PRUPE_ppa026651mg
N
0.796
cassava14279.m1
Manihot esculenta
cassava14279.m1
N
0.786
29650.m000279
Ricinus communis
29650.m000279
N
0.779
gene24427-v1.0-hybrid
Fragaria vesca
gene24427-v1.0-hybrid
N
0.778
cassava27051.m1
Manihot esculenta
cassava27051.m1
N
0.775
VIT_11s0037g00010
Vitis vinifera
VIT_11s0037g00010
N
0.771
POPTR_0003s21810
Populus trichocarpa
POPTR_0003s21810
N
0.757
Eucgr.C00358
Eucalyptus grandis
Eucgr.C00358
N
0.755
orange1.1g018549m.g
Citrus sinensis
orange1.1g018549m.g
N
0.750
evm.TU.contig_32277
Carica papaya
evm.TU.contig_32277
N
0.747
POPTR_0018s11780
Populus trichocarpa
POPTR_0018s11780
N
0.747
LjSGA_031594.1
Lotus japonicus
LjSGA_031594.1
N
0.746
Cla019009
Citrullus lanatus
Cla019009
N
0.743
Ciclev10010403m.g
Citrus clementina
Ciclev10010403m.g
N
0.725
Cucsa.350980
Cucumis sativus
Cucsa.350980
N
0.725
Bra014282
Brassica rapa
Bra014282
N
0.725
PK28088.1
Cannabis sativa
PK28088.1
N
0.723
SapurV1A.2134s0020
Salix purpurea
SapurV1A.2134s0020
N
0.722
SapurV1A.0009s0070
Salix purpurea
SapurV1A.0009s0070
N
0.718
Bo3g179890
Brassica oleracea
Bo3g179890
N
0.718
cassava8667.m1
Manihot esculenta
cassava8667.m1
N
0.704
28008.m000029
Ricinus communis
28008.m000029
N
0.701