CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCRM2
(
Arabidopsis lyrata
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Al_scaffold_0001_1326
T030443_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.888
0.979
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0001_1326
bHLH
266
313
AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRAAILGDAIDYLKELL
Links
Other
bHLH
family TFs
Other
Arabidopsis lyrata
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.888
Ca_01394
Cicer arietinum
Ca_01394
I
0.888
Cla002682
Citrullus lanatus
Cla002682
I
0.888
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.888
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.888
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.888
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.888
Cla003283
Citrullus lanatus
Cla003283
I
0.888
Pm016093
Prunus mume
Pm016093
I
0.888
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.888
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.888
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.888
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.888
Pm024587
Prunus mume
Pm024587
I
0.888
30147.m014419
Ricinus communis
30147.m014419
I
0.888
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.888
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.888
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.888
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.888
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.888
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.888
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.888
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.888
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.888
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.888
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.888
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.888
TCM_014741
Theobroma cacao
TCM_014741
I
0.888
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.888
Si001874m.g
Setaria italica
Si001874m.g
I
0.888
Si026212m.g
Setaria italica
Si026212m.g
I
0.888
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.888
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.888
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.888
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.888
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.888
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.888
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.888
MDP0000304669
Malus domestica
MDP0000304669
I
0.888
MDP0000662999
Malus domestica
MDP0000662999
I
0.888
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.888
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.888
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.888
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.888
PK06940.1
Cannabis sativa
PK06940.1
I
0.888
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.888
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.888
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.888
MDP0000247912
Malus domestica
MDP0000247912
I
0.888
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.888
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.888
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.888
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.888
mgf016462m
Mimulus guttatus
mgf016462m
I
0.888
mgf012194m
Mimulus guttatus
mgf012194m
I
0.888
mgf015974m
Mimulus guttatus
mgf015974m
I
0.888
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.888
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.888
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.888
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.888
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.888
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.888
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.888
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.888
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.888
TCM_017336
Theobroma cacao
TCM_017336
I
0.888
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.888
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.888
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.888
Bra025226
Brassica rapa
Bra025226
I
0.888
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.888
Bra019794
Brassica rapa
Bra019794
I
0.888
Bra016749
Brassica rapa
Bra016749
I
0.888
OBART11G15260
Oryza barthii
OBART11G15260
I
0.888
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.888
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.888
OBART01G42600
Oryza barthii
OBART01G42600
I
0.888
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.888
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.888
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.888
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.888
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.888
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.888
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.888
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.888
F775_14780
Aegilops tauschii
F775_14780
I
0.888
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.888
Bra032947
Brassica rapa
Bra032947
I
0.888
Bra034246
Brassica rapa
Bra034246
I
0.888
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.888
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.888
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.888
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.888
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.888
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.888
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.888
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.888
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.888
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.888
SCRM
Arabidopsis thaliana
AT3G26744
D
0.888
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.888
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.888
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.888
OS11G0523700
Oryza sativa
OS11G0523700
I
0.888
OS01G0928000
Oryza sativa
OS01G0928000
I
0.888
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.888
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.888
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.888
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.888
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.888
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.888
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.888
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.888
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.888
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.888
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.888
PRUPE_ppa002978mg
Prunus persica
PRUPE_ppa002978mg
I
0.884
Ciclev10033428m.g
Citrus clementina
Ciclev10033428m.g
I
0.876
Ca_23892
Cicer arietinum
Ca_23892
I
0.876
Pavir.Ha01426
Panicum virgatum
Pavir.Ha01426
I
0.876
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.876
orange1.1g041101m.g
Citrus sinensis
orange1.1g041101m.g
I
0.876
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.876
PK06841.1
Cannabis sativa
PK06841.1
I
0.864
MDP0000219146
Malus domestica
MDP0000219146
I
0.864
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.864
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.864
Pm020878
Prunus mume
Pm020878
N
0.864
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.864
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.864
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.864
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.864
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.864
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.861
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.861
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.861
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.861
BRADI3G01901
Brachypodium distachyon
BRADI3G01901
I
0.860
BRADI4G17460
Brachypodium distachyon
BRADI4G17460
I
0.858
Lus10043199.g
Linum usitatissimum
Lus10043199.g
I
0.858
Lus10032542.g
Linum usitatissimum
Lus10032542.g
I
0.858
Solyc06g068870.2
Solanum lycopersicum
Solyc06g068870.2
I
0.858
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
0.858
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
0.858
PGSC0003DMG401028788
Solanum tuberosum
PGSC0003DMG401028788
I
0.858
GLYMA05G38530
Glycine max
GLYMA05G38530
I
0.858
30131.m006993
Ricinus communis
30131.m006993
I
0.852
cassava7475.valid.m1
Manihot esculenta
cassava7475.valid.m1
I
0.852
Gorai.009G337700
Gossypium raimondii
Gorai.009G337700
N
0.852
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.851
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.851
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.851
MDP0000790939
Malus domestica
MDP0000790939
N
0.849
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.848
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.848
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.848
SELMODRAFT_430203
Selaginella moellendorffii
SELMODRAFT_430203
I
0.843
SELMODRAFT_16038
Selaginella moellendorffii
SELMODRAFT_16038
I
0.843
SELMODRAFT_451590
Selaginella moellendorffii
SELMODRAFT_451590
I
0.843
SELMODRAFT_16039
Selaginella moellendorffii
SELMODRAFT_16039
I
0.843
e_gw1.25.105.1
Physcomitrella patens
e_gw1.25.105.1
I
0.843
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
0.843
estExt_fgenesh1_pg.C_1590022
Physcomitrella patens
estExt_fgenesh1_pg.C_1590022
I
0.843
Cucsa.010660
Cucumis sativus
Cucsa.010660
I
0.843
Pm008898
Prunus mume
Pm008898
I
0.843
Cla016068
Citrullus lanatus
Cla016068
I
0.843
AMTR_s00096p00160080
Amborella trichopoda
AMTR_s00096p00160080
I
0.842
fgenesh1_pg.scaffold_1000274
Physcomitrella patens
fgenesh1_pg.scaffold_1000274
I
0.840
estExt_gwp_gw1.C_1820005
Physcomitrella patens
estExt_gwp_gw1.C_1820005
I
0.840
GRMZM2G139372
Zea mays
GRMZM2G139372
N
0.840