CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_5g048350
(
Medicago truncatula
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
MTR_5g048350
T041681_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.884
0.902
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.884
0.902
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.884
0.902
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.864
0.804
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.864
0.804
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.864
0.804
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.864
0.804
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.861
0.804
BIM3
M01711_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8591
0.861
0.804
BIM3
M06741_2.00
Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH
Dap-seq
OMalley et al.(2016)
BIM3_col_a
0.861
0.804
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES97297
bHLH
45
95
IRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQ
AES97298
bHLH
45
87
IRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEE
Links
Other
bHLH
family TFs
Other
Medicago truncatula
TFs
165 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29790.m000843
Ricinus communis
29790.m000843
I
0.914
cassava14.valid.m1
Manihot esculenta
cassava14.valid.m1
I
0.914
cassava15.valid.m1
Manihot esculenta
cassava15.valid.m1
I
0.914
Ca_22043
Cicer arietinum
Ca_22043
I
0.914
BIM3
Vitis vinifera
VIT_14s0083g00930
I
0.914
GLYMA18G51080
Glycine max
GLYMA18G51080
I
0.914
POPTR_0004s11180
Populus trichocarpa
POPTR_0004s11180
I
0.914
Cucsa.174600
Cucumis sativus
Cucsa.174600
I
0.914
Eucgr.I02069
Eucalyptus grandis
Eucgr.I02069
I
0.914
SapurV1A.2517s0020
Salix purpurea
SapurV1A.2517s0020
I
0.914
Thhalv10027863m.g
Eutrema salsugineum
Thhalv10027863m.g
I
0.914
PK00238.1
Cannabis sativa
PK00238.1
I
0.914
SapurV1A.0274s0040
Salix purpurea
SapurV1A.0274s0040
I
0.914
Lus10026684.g
Linum usitatissimum
Lus10026684.g
I
0.914
Gorai.001G197500
Gossypium raimondii
Gorai.001G197500
I
0.914
Lus10004630.g
Linum usitatissimum
Lus10004630.g
I
0.914
GLYMA08G28010
Glycine max
GLYMA08G28010
I
0.914
TCM_019015
Theobroma cacao
TCM_019015
I
0.914
POPTR_0017s13610
Populus trichocarpa
POPTR_0017s13610
I
0.912
Aquca_002_00952
Aquilegia coerulea
Aquca_002_00952
I
0.894
Pavir.J38910
Panicum virgatum
Pavir.J38910
I
0.892
Sb07g028860
Sorghum bicolor
Sb07g028860
I
0.892
Si013622m.g
Setaria italica
Si013622m.g
I
0.892
Pavir.Fb01833
Panicum virgatum
Pavir.Fb01833
I
0.892
Ciclev10012135m.g
Citrus clementina
Ciclev10012135m.g
I
0.890
Lus10034358.g
Linum usitatissimum
Lus10034358.g
I
0.890
orange1.1g019485m.g
Citrus sinensis
orange1.1g019485m.g
I
0.890
Bra038332
Brassica rapa
Bra038332
I
0.884
Cagra.1157s0023
Capsella grandiflora
Cagra.1157s0023
I
0.884
PRUPE_ppa008387mg
Prunus persica
PRUPE_ppa008387mg
I
0.884
PRUPE_ppa008856mg
Prunus persica
PRUPE_ppa008856mg
I
0.884
POPTR_0010s14740
Populus trichocarpa
POPTR_0010s14740
I
0.884
POPTR_0008s11120
Populus trichocarpa
POPTR_0008s11120
I
0.884
Cla022382
Citrullus lanatus
Cla022382
I
0.884
PGSC0003DMG400019654
Solanum tuberosum
PGSC0003DMG400019654
I
0.884
cassava43370.valid.m1
Manihot esculenta
cassava43370.valid.m1
I
0.884
Carubv10020679m.g
Capsella rubella
Carubv10020679m.g
I
0.884
TCM_011433
Theobroma cacao
TCM_011433
I
0.884
Bostr.10273s0468
Boechera stricta
Bostr.10273s0468
I
0.884
mgf011829m
Mimulus guttatus
mgf011829m
I
0.884
Cucsa.328060
Cucumis sativus
Cucsa.328060
I
0.884
BIM2
Vitis vinifera
VIT_01s0010g00540
I
0.884
Solyc04g005280.2
Solanum lycopersicum
Solyc04g005280.2
I
0.884
Bo6g108530
Brassica oleracea
Bo6g108530
I
0.884
Ciclev10032020m.g
Citrus clementina
Ciclev10032020m.g
I
0.884
Bra004355
Brassica rapa
Bra004355
I
0.884
cassava29314.valid.m1
Manihot esculenta
cassava29314.valid.m1
I
0.884
30138.m003899
Ricinus communis
30138.m003899
I
0.884
mgf013208m
Mimulus guttatus
mgf013208m
I
0.884
Solyc05g011810.2
Solanum lycopersicum
Solyc05g011810.2
I
0.884
PGSC0003DMG400001919
Solanum tuberosum
PGSC0003DMG400001919
I
0.884
SapurV1A.0084s0570
Salix purpurea
SapurV1A.0084s0570
I
0.884
Thhalv10018889m.g
Eutrema salsugineum
Thhalv10018889m.g
I
0.884
orange1.1g019960m.g
Citrus sinensis
orange1.1g019960m.g
I
0.884
MDP0000261293
Malus domestica
MDP0000261293
I
0.884
Gorai.013G098000
Gossypium raimondii
Gorai.013G098000
I
0.884
Gorai.009G327300
Gossypium raimondii
Gorai.009G327300
I
0.884
Bo2g062560
Brassica oleracea
Bo2g062560
I
0.884
gene04534-v1.0-hybrid
Fragaria vesca
gene04534-v1.0-hybrid
I
0.884
BIM2
Arabidopsis lyrata
fgenesh2_kg.2__1159__AT1G69010.1
I
0.884
Eucgr.B03113
Eucalyptus grandis
Eucgr.B03113
I
0.884
GLYMA02G13670
Glycine max
GLYMA02G13670
I
0.884
BIM2
Arabidopsis thaliana
AT1G69010
D
0.884
MTR_7g017320
Medicago truncatula
MTR_7g017320
I
0.884
PK01364.1
Cannabis sativa
PK01364.1
I
0.882
SapurV1A.0060s0510
Salix purpurea
SapurV1A.0060s0510
I
0.882
Gorai.008G175100
Gossypium raimondii
Gorai.008G175100
N
0.873
GLYMA01G09010
Glycine max
GLYMA01G09010
I
0.873
evm.TU.supercontig_289.6
Carica papaya
evm.TU.supercontig_289.6
I
0.871
evm.TU.supercontig_3.225
Carica papaya
evm.TU.supercontig_3.225
I
0.864
cassava29318.valid.m1
Manihot esculenta
cassava29318.valid.m1
I
0.864
BIM1
Arabidopsis thaliana
AT5G08130
D
0.864
Carubv10000655m.g
Capsella rubella
Carubv10000655m.g
I
0.864
Bo5g020460
Brassica oleracea
Bo5g020460
I
0.864
Ciclev10020248m.g
Citrus clementina
Ciclev10020248m.g
I
0.864
Bo2g161110
Brassica oleracea
Bo2g161110
I
0.864
cassava43379.valid.m1
Manihot esculenta
cassava43379.valid.m1
I
0.864
PK10562.1
Cannabis sativa
PK10562.1
I
0.864
SapurV1A.0868s0010
Salix purpurea
SapurV1A.0868s0010
I
0.864
mgf005849m
Mimulus guttatus
mgf005849m
I
0.864
Eucgr.B00645
Eucalyptus grandis
Eucgr.B00645
I
0.864
orange1.1g038451m.g
Citrus sinensis
orange1.1g038451m.g
I
0.864
Gorai.007G040600
Gossypium raimondii
Gorai.007G040600
I
0.864
mgf001137m
Mimulus guttatus
mgf001137m
I
0.864
Cagra.1365s0019
Capsella grandiflora
Cagra.1365s0019
I
0.864
Bostr.13129s0152
Boechera stricta
Bostr.13129s0152
I
0.864
Cucsa.113490
Cucumis sativus
Cucsa.113490
I
0.864
SapurV1A.0178s0150
Salix purpurea
SapurV1A.0178s0150
I
0.864
Bo3g004690
Brassica oleracea
Bo3g004690
I
0.864
Thhalv10013181m.g
Eutrema salsugineum
Thhalv10013181m.g
I
0.864
Bo9g174770
Brassica oleracea
Bo9g174770
I
0.864
Solyc03g114720.2
Solanum lycopersicum
Solyc03g114720.2
I
0.864
Solyc06g069370.2
Solanum lycopersicum
Solyc06g069370.2
I
0.864
PRUPE_ppa003436mg
Prunus persica
PRUPE_ppa003436mg
I
0.864
BIM1
Arabidopsis lyrata
scaffold_600819.1
I
0.864
Bra009322
Brassica rapa
Bra009322
I
0.864
MTR_4g110040
Medicago truncatula
MTR_4g110040
I
0.864
TCM_014392
Theobroma cacao
TCM_014392
I
0.864
BIM1
Vitis vinifera
VIT_17s0000g04790
I
0.864
POPTR_0015s03550
Populus trichocarpa
POPTR_0015s03550
I
0.864
Bra029354
Brassica rapa
Bra029354
I
0.864
GLYMA05G07490
Glycine max
GLYMA05G07490
I
0.864
OS08G0490000
Oryza sativa
OS08G0490000
I
0.861
Carubv10006445m.g
Capsella rubella
Carubv10006445m.g
I
0.861
Cagra.2539s0002
Capsella grandiflora
Cagra.2539s0002
I
0.861
ORUFI08G21030
Oryza rufipogon
ORUFI08G21030
I
0.861
BGIOSGA028888
Oryza indica
BGIOSGA028888
I
0.861
BIM3
Arabidopsis thaliana
AT5G38860
D
0.861
BRADI3G38970
Brachypodium distachyon
BRADI3G38970
I
0.861
OB08G25940
Oryza brachyantha
OB08G25940
I
0.861
OGLUM08G19830
Oryza glumaepatula
OGLUM08G19830
I
0.861
ONIVA08G20800
Oryza nivara
ONIVA08G20800
I
0.861
OLONG_003583
Oryza longistaminata
OLONG_003583
I
0.861
OPUNC08G16820
Oryza punctata
OPUNC08G16820
I
0.861
ORGLA08G0164200
Oryza glaberrima
ORGLA08G0164200
I
0.861
gw1.90.123.1
Physcomitrella patens
gw1.90.123.1
I
0.861
SELMODRAFT_451475
Selaginella moellendorffii
SELMODRAFT_451475
I
0.861
fgenesh1_pg.scaffold_37000071
Physcomitrella patens
fgenesh1_pg.scaffold_37000071
D
0.861
AMTR_s00006p00250310
Amborella trichopoda
AMTR_s00006p00250310
I
0.861
estExt_fgenesh1_pg.C_2110039
Physcomitrella patens
estExt_fgenesh1_pg.C_2110039
I
0.861
Traes_7DL_04FC0BF21
Triticum aestivum
Traes_7DL_04FC0BF21
N
0.861
SELMODRAFT_451477
Selaginella moellendorffii
SELMODRAFT_451477
I
0.861
BIM3
Arabidopsis lyrata
scaffold_704174.1
I
0.861
Bra005969
Brassica rapa
Bra005969
I
0.861
Aquca_006_00387
Aquilegia coerulea
Aquca_006_00387
I
0.858
MTR_1g019240
Medicago truncatula
MTR_1g019240
I
0.856
LPERR06G03910
Leersia perrieri
LPERR06G03910
I
0.856
ALC
Arabidopsis lyrata
fgenesh2_kg.8__2705__AT5G67110.1
I
0.856
BGIOSGA022375
Oryza indica
BGIOSGA022375
I
0.856
Ca_19269
Cicer arietinum
Ca_19269
I
0.856
Pavir.J15575
Panicum virgatum
Pavir.J15575
I
0.856
Bra012133
Brassica rapa
Bra012133
I
0.856
GRMZM2G017349
Zea mays
GRMZM2G017349
I
0.856
ALC
Arabidopsis thaliana
AT5G67110
I
0.856
Pavir.J38250
Panicum virgatum
Pavir.J38250
I
0.856
Thhalv10004889m.g
Eutrema salsugineum
Thhalv10004889m.g
I
0.856
OGLUM06G04430
Oryza glumaepatula
OGLUM06G04430
I
0.856
OBART06G04330
Oryza barthii
OBART06G04330
I
0.856
Bostr.0568s0133
Boechera stricta
Bostr.0568s0133
I
0.856
ORGLA06G0039900
Oryza glaberrima
ORGLA06G0039900
I
0.856
ORUFI06G04330
Oryza rufipogon
ORUFI06G04330
I
0.856
PGSC0003DMG401007955
Solanum tuberosum
PGSC0003DMG401007955
I
0.856
Sb10g004500
Sorghum bicolor
Sb10g004500
I
0.856
Carubv10028570m.g
Capsella rubella
Carubv10028570m.g
I
0.856
gene09125-v1.0-hybrid
Fragaria vesca
gene09125-v1.0-hybrid
I
0.856
ONIVA06G05510
Oryza nivara
ONIVA06G05510
I
0.856
OMERI06G05430
Oryza meridionalis
OMERI06G05430
I
0.856
Cla018818
Citrullus lanatus
Cla018818
I
0.852
Cucsa.198520
Cucumis sativus
Cucsa.198520
I
0.852
GLYMA17G08980
Glycine max
GLYMA17G08980
I
0.852
Gorai.006G269200
Gossypium raimondii
Gorai.006G269200
I
0.851
MDP0000149222
Malus domestica
MDP0000149222
N
0.851
GSMUA_Achr9G28050_001
Musa acuminata
GSMUA_Achr9G28050_001
I
0.851
POPTR_0012s06650
Populus trichocarpa
POPTR_0012s06650
I
0.851
LPERR04G17400
Leersia perrieri
LPERR04G17400
I
0.841
Sb06g025040
Sorghum bicolor
Sb06g025040
I
0.841
Sb06g025060
Sorghum bicolor
Sb06g025060
I
0.841
Si012401m.g
Setaria italica
Si012401m.g
I
0.841
Si000845m.g
Setaria italica
Si000845m.g
I
0.841
GRMZM2G172795
Zea mays
GRMZM2G172795
I
0.841
30138.m003913
Ricinus communis
30138.m003913
I
0.840
GSMUA_Achr9G19110_001
Musa acuminata
GSMUA_Achr9G19110_001
I
0.840
gene26139-v1.0-hybrid
Fragaria vesca
gene26139-v1.0-hybrid
I
0.840
GSMUA_Achr4G19530_001
Musa acuminata
GSMUA_Achr4G19530_001
I
0.840
GSMUA_Achr2G05450_001
Musa acuminata
GSMUA_Achr2G05450_001
I
0.840