Gorai.007G040600 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.007G040600 T050003_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.894 0.941
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.894 0.941
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.894 0.941
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.894 0.941
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.894 0.784
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.894 0.784
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.894 0.784
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.861 0.902
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.843 0.490
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G040600.1 bHLH 260 310
Gorai.007G040600.2 bHLH 260 310
Gorai.007G040600.3 bHLH 260 310
Gorai.007G040600.4 bHLH 190 240

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.894
Bra038332 Brassica rapa Bra038332 I 0.894
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.894
Bra029354 Brassica rapa Bra029354 I 0.894
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.894
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.894
Bra009322 Brassica rapa Bra009322 I 0.894
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.894
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.894
mgf001137m Mimulus guttatus mgf001137m I 0.894
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.894
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.894
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.894
TCM_011433 Theobroma cacao TCM_011433 I 0.894
PK10562.1 Cannabis sativa PK10562.1 I 0.894
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.894
Bra004355 Brassica rapa Bra004355 I 0.894
mgf005849m Mimulus guttatus mgf005849m I 0.894
Bo2g062560 Brassica oleracea Bo2g062560 I 0.894
Bo9g174770 Brassica oleracea Bo9g174770 I 0.894
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.894
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.894
mgf011829m Mimulus guttatus mgf011829m I 0.894
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.894
BIM2 Arabidopsis thaliana AT1G69010 D 0.894
Bo2g161110 Brassica oleracea Bo2g161110 I 0.894
Bo5g020460 Brassica oleracea Bo5g020460 I 0.894
Bo6g108530 Brassica oleracea Bo6g108530 I 0.894
BIM1 Arabidopsis thaliana AT5G08130 D 0.894
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.894
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.894
Bo3g004690 Brassica oleracea Bo3g004690 I 0.894
Bra005969 Brassica rapa Bra005969 I 0.892
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.881
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.866
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.866
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.866
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.866
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.866
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.866
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.866
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.866
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.866
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.866
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.866
OBART06G04330 Oryza barthii OBART06G04330 I 0.866
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.866
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.866
Bra012133 Brassica rapa Bra012133 I 0.866
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.866
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.866
ALC Arabidopsis thaliana AT5G67110 I 0.866
Ca_19269 Cicer arietinum Ca_19269 I 0.866
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.866
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.866
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.866
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.864
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.864
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.864
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.864
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.864
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.864
mgf013208m Mimulus guttatus mgf013208m I 0.864
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.864
TCM_019015 Theobroma cacao TCM_019015 I 0.864
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.864
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.864
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.864
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.864
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.864
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.864
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.864
Ca_22043 Cicer arietinum Ca_22043 I 0.864
TCM_014392 Theobroma cacao TCM_014392 I 0.864
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.864
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.864
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.864
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.864
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.864
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.864
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.864
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.864
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.864
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.864
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.864
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.864
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.864
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.864
PK00238.1 Cannabis sativa PK00238.1 I 0.864
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.864
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.864
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.864
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.864
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.864
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.864
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.864
MDP0000261293 Malus domestica MDP0000261293 I 0.864
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.864
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.864
30138.m003899 Ricinus communis 30138.m003899 I 0.864
29790.m000843 Ricinus communis 29790.m000843 I 0.864
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.864
Cla022382 Citrullus lanatus Cla022382 I 0.864
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.864
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.864
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.864
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.864
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.864
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.864
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.864
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.864
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.864
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.864
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.861
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.861
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.861
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.861
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.861
OB08G25940 Oryza brachyantha OB08G25940 I 0.861
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.861
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.861
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.861
PK01364.1 Cannabis sativa PK01364.1 I 0.861
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.861
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.861
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.861
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.861
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.861
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.861
Si013622m.g Setaria italica Si013622m.g I 0.861
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.861
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.861
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.861
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.861
OS08G0490000 Oryza sativa OS08G0490000 I 0.861
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.861
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.856
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.856
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.856
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.856
Cla018818 Citrullus lanatus Cla018818 I 0.852
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.852
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.852
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.852
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.851
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.851
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.851
PK20816.1 Cannabis sativa PK20816.1 I 0.843
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.843
29739.m003684 Ricinus communis 29739.m003684 I 0.843
Bo3g042120 Brassica oleracea Bo3g042120 I 0.843
Bo3g054850 Brassica oleracea Bo3g054850 I 0.843
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.843
MDP0000439540 Malus domestica MDP0000439540 I 0.843
OBART06G06000 Oryza barthii OBART06G06000 I 0.843
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.843
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.843
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.843
cassava19894.m1 Manihot esculenta cassava19894.m1 I 0.843
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.843
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.843
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.843
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.843
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.843
Bra000560 Brassica rapa Bra000560 I 0.843
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.843
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.843
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.843
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.843
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.843
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.843
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.843
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.843
GRMZM2G024530 Zea mays GRMZM2G024530 I 0.843
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I 0.843
Bra037312 Brassica rapa Bra037312 I 0.843
30174.m008814 Ricinus communis 30174.m008814 I 0.843
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I 0.843
Pavir.J15280 Panicum virgatum Pavir.J15280 I 0.843
GRMZM2G116785 Zea mays GRMZM2G116785 I 0.843
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.843
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.843
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.843
Si006332m.g Setaria italica Si006332m.g I 0.843
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.843
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.843
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.843
Sb10g006250 Sorghum bicolor Sb10g006250 I 0.843
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.843
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.843
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.843
mgf005431m Mimulus guttatus mgf005431m I 0.843
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.843
TCM_037455 Theobroma cacao TCM_037455 I 0.843
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.843
TCM_005607 Theobroma cacao TCM_005607 I 0.843
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.843
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.843
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.843
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.843
OS06G0193400 Oryza sativa OS06G0193400 I 0.843
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.843
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.843
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.843
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.843
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.843
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.843
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.843
UNE10 Arabidopsis thaliana AT4G00050 D 0.843
Ca_22883 Cicer arietinum Ca_22883 I 0.843
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.843
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.843
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.843
PK08539.1 Cannabis sativa PK08539.1 I 0.843
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.842
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.842
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.842
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.842
TCM_004959 Theobroma cacao TCM_004959 I 0.842
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.842
30138.m003913 Ricinus communis 30138.m003913 I 0.840
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.840
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.840
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.840
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.840
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.840
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.840
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.840