Gorai.006G269200 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.006G269200 T049996_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.901 0.902
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.901 0.902
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.901 0.902
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.901 0.902
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.881 0.765
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.881 0.765
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.881 0.765
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.869 0.843
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.843 0.490
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G269200.1 bHLH 256 306
Gorai.006G269200.2 bHLH 189 239

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029354 Brassica rapa Bra029354 I 0.901
Bra009322 Brassica rapa Bra009322 I 0.901
Bo9g174770 Brassica oleracea Bo9g174770 I 0.901
Bo5g020460 Brassica oleracea Bo5g020460 I 0.901
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.901
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.901
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.901
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.901
mgf001137m Mimulus guttatus mgf001137m I 0.901
mgf005849m Mimulus guttatus mgf005849m I 0.901
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.901
Bo3g004690 Brassica oleracea Bo3g004690 I 0.901
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.901
PK10562.1 Cannabis sativa PK10562.1 I 0.901
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.901
BIM1 Arabidopsis thaliana AT5G08130 D 0.901
Bo2g161110 Brassica oleracea Bo2g161110 I 0.901
Bra005969 Brassica rapa Bra005969 I 0.899
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.884
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.881
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.881
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.881
mgf011829m Mimulus guttatus mgf011829m I 0.881
Bo6g108530 Brassica oleracea Bo6g108530 I 0.881
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.881
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.881
TCM_011433 Theobroma cacao TCM_011433 I 0.881
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.881
Bra004355 Brassica rapa Bra004355 I 0.881
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.881
Bo2g062560 Brassica oleracea Bo2g062560 I 0.881
Bra038332 Brassica rapa Bra038332 I 0.881
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.881
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.881
BIM2 Arabidopsis thaliana AT1G69010 D 0.881
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.871
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.871
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.871
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.871
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.871
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.871
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.871
TCM_014392 Theobroma cacao TCM_014392 I 0.871
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.871
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.871
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.871
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.871
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.871
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.871
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.871
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.871
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.869
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.869
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.869
OS08G0490000 Oryza sativa OS08G0490000 I 0.869
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.869
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.869
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.869
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.869
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.869
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.869
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.869
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.869
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.869
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.869
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.869
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.869
Si013622m.g Setaria italica Si013622m.g I 0.869
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.869
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.869
OB08G25940 Oryza brachyantha OB08G25940 I 0.869
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.866
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.866
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.866
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.866
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.866
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.866
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.866
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.866
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.866
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.866
ALC Arabidopsis thaliana AT5G67110 I 0.866
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.866
OBART06G04330 Oryza barthii OBART06G04330 I 0.866
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.866
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.866
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.866
Bra012133 Brassica rapa Bra012133 I 0.866
Ca_19269 Cicer arietinum Ca_19269 I 0.866
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.866
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.866
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.866
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.866
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.864
GRMZM2G024530 Zea mays GRMZM2G024530 I 0.863
GRMZM2G116785 Zea mays GRMZM2G116785 I 0.863
Si006332m.g Setaria italica Si006332m.g I 0.863
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.863
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.863
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I 0.863
Pavir.J15280 Panicum virgatum Pavir.J15280 I 0.863
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.863
Sb10g006250 Sorghum bicolor Sb10g006250 I 0.863
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I 0.863
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.863
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.860
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.860
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.859
Cla018818 Citrullus lanatus Cla018818 I 0.859
e_gw1.167.42.1 Physcomitrella patens e_gw1.167.42.1 I 0.855
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.851
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.851
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.851
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.851
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.851
MDP0000261293 Malus domestica MDP0000261293 I 0.851
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.851
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.851
TCM_019015 Theobroma cacao TCM_019015 I 0.851
mgf013208m Mimulus guttatus mgf013208m I 0.851
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.851
OLONG_025501 Oryza longistaminata OLONG_025501 I 0.851
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.851
30138.m003899 Ricinus communis 30138.m003899 I 0.851
OGLUM02G21200 Oryza glumaepatula OGLUM02G21200 I 0.851
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.851
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.851
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.851
29790.m000843 Ricinus communis 29790.m000843 I 0.851
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.851
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.851
OMERI02G20700 Oryza meridionalis OMERI02G20700 I 0.851
PK00238.1 Cannabis sativa PK00238.1 I 0.851
Ca_22043 Cicer arietinum Ca_22043 I 0.851
Cla022382 Citrullus lanatus Cla022382 I 0.851
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.851
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.851
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.851
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.851
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.851
OB02G28530 Oryza brachyantha OB02G28530 I 0.851
ORUFI02G21960 Oryza rufipogon ORUFI02G21960 I 0.851
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.851
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.851
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.851
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.851
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.851
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.851
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.851
OS02G0564700 Oryza sativa OS02G0564700 I 0.851
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.851
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.851
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.851
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.851
OPUNC02G18940 Oryza punctata OPUNC02G18940 I 0.851
ONIVA02G23040 Oryza nivara ONIVA02G23040 I 0.851
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.851
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.851
OBART02G20940 Oryza barthii OBART02G20940 I 0.851
BGIOSGA006236 Oryza indica BGIOSGA006236 I 0.851
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.851
ORGLA02G0180000 Oryza glaberrima ORGLA02G0180000 I 0.851
Pavir.Ab02747 Panicum virgatum Pavir.Ab02747 I 0.850
GRMZM5G839518 Zea mays GRMZM5G839518 I 0.850
Pavir.Aa01634 Panicum virgatum Pavir.Aa01634 I 0.850
Si016939m.g Setaria italica Si016939m.g I 0.850
Sb04g023320 Sorghum bicolor Sb04g023320 I 0.850
PK01364.1 Cannabis sativa PK01364.1 I 0.849
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.849
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.849
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.847
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.847
30138.m003913 Ricinus communis 30138.m003913 I 0.847
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.847
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.845
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.843
Bra037312 Brassica rapa Bra037312 I 0.843
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.843
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.843
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.843
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.843
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.843
UNE10 Arabidopsis thaliana AT4G00050 D 0.843
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.843
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.843
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.843
PK08539.1 Cannabis sativa PK08539.1 I 0.843
PK20816.1 Cannabis sativa PK20816.1 I 0.843
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.843
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.843
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.843
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.843
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.843
Bra000560 Brassica rapa Bra000560 I 0.843
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.843
Bo3g054850 Brassica oleracea Bo3g054850 I 0.843
MDP0000439540 Malus domestica MDP0000439540 I 0.843
Bo3g042120 Brassica oleracea Bo3g042120 I 0.843
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.843
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.843
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.843
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.843
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.843
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.843
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.843
TCM_005607 Theobroma cacao TCM_005607 I 0.843
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.843
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.843
TCM_037455 Theobroma cacao TCM_037455 I 0.843
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.843
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.843
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.843
OBART06G06000 Oryza barthii OBART06G06000 I 0.843
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.843
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.843
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.843
OS06G0193400 Oryza sativa OS06G0193400 I 0.843
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.843
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.843
Ca_22883 Cicer arietinum Ca_22883 I 0.843
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.843
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.843
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.843
29739.m003684 Ricinus communis 29739.m003684 I 0.843
mgf005431m Mimulus guttatus mgf005431m I 0.843
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.843
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.843
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.843
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.843
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.843
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.843
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.843
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.843
cassava19894.m1 Manihot esculenta cassava19894.m1 I 0.843
30174.m008814 Ricinus communis 30174.m008814 I 0.843
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.842
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.842
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.842
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.842
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.842
OBART09G13850 Oryza barthii OBART09G13850 I 0.842
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.842
F775_23096 Aegilops tauschii F775_23096 I 0.842
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.842
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.842
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.842
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.842
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.842
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.842
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.842
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.842
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.842
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.842
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.842
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.842
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.842
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.842
OS09G0475400 Oryza sativa OS09G0475400 I 0.842
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.842
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.842
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.842
Si029604m.g Setaria italica Si029604m.g I 0.842
TCM_004959 Theobroma cacao TCM_004959 I 0.842
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.840