LPERR08G15680 (Leersia perrieri)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 LPERR08G15680 T041038_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.888 0.863
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.858 0.863
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.858 0.863
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.858 0.863
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.858 0.863
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LPERR08G15680.1 bHLH 210 260
LPERR08G15680.2 bHLH 197 247

Links

Other bHLH family TFs
Other Leersia perrieri TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.890
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.890
OB08G25940 Oryza brachyantha OB08G25940 I 0.890
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.890
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.890
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.890
OS08G0490000 Oryza sativa OS08G0490000 I 0.890
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.890
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.890
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.890
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.890
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.890
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.888
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.888
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.888
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.888
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.888
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.888
30138.m003913 Ricinus communis 30138.m003913 I 0.888
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.888
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.888
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.888
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.888
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.888
TCM_014392 Theobroma cacao TCM_014392 I 0.888
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.888
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.888
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.888
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.888
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.888
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.888
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.877
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.877
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.876
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.876
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.875
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.868
PK01364.1 Cannabis sativa PK01364.1 I 0.868
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.868
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.868
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.868
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.868
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.868
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.868
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.868
mgf013208m Mimulus guttatus mgf013208m I 0.868
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.868
MDP0000261293 Malus domestica MDP0000261293 I 0.868
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.868
30138.m003899 Ricinus communis 30138.m003899 I 0.868
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.868
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.868
Cla022382 Citrullus lanatus Cla022382 I 0.868
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.868
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.868
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.868
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.868
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.868
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.864
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.864
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.864
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.864
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.864
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.864
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.864
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.864
OBART09G13850 Oryza barthii OBART09G13850 I 0.864
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.864
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.864
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.864
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.864
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.864
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.864
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.864
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.864
Si029604m.g Setaria italica Si029604m.g I 0.864
F775_23096 Aegilops tauschii F775_23096 I 0.864
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.864
OS09G0475400 Oryza sativa OS09G0475400 I 0.864
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.864
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.864
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.864
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.864
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.861
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.861
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.860
Si013622m.g Setaria italica Si013622m.g I 0.860
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.860
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.860
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.858
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.858
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.858
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.858
Bra009322 Brassica rapa Bra009322 I 0.858
PK10562.1 Cannabis sativa PK10562.1 I 0.858
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.858
Bo9g174770 Brassica oleracea Bo9g174770 I 0.858
Bo3g004690 Brassica oleracea Bo3g004690 I 0.858
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.858
Bra029354 Brassica rapa Bra029354 I 0.858
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.858
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.858
BIM1 Arabidopsis thaliana AT5G08130 D 0.858
Bo5g020460 Brassica oleracea Bo5g020460 I 0.858
Bo2g161110 Brassica oleracea Bo2g161110 I 0.858
mgf005849m Mimulus guttatus mgf005849m I 0.858
Bra005969 Brassica rapa Bra005969 I 0.858
mgf001137m Mimulus guttatus mgf001137m I 0.858
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.858
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.856
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.855
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.854
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.854
Si016505m.g Setaria italica Si016505m.g I 0.854
OS02G0726700 Oryza sativa OS02G0726700 I 0.854
OB02G38020 Oryza brachyantha OB02G38020 I 0.854
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.854
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.854
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.854
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.854
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.852
Cla018818 Citrullus lanatus Cla018818 I 0.846
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.845
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.845
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.843
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.840