CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_09s0054g01820
(
Vitis vinifera
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
VIT_09s0054g01820
T131473_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.769
0.854
id1
M02672_2.00
Zea mays
TBKYYBYTHBYG
CRVDARVRRMVA
SELEX
Mathelier et al.(2014)
MA0120.1
0.762
0.756
id1
M10380_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ID1_01
0.762
0.756
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_09s0054g01820.t01
C2H2 ZF
82
103
WKCDKCSKRYAVQSDWKAHTKI
VIT_09s0054g01820.t01
C2H2 ZF
104
128
CGTREYRCDCGTIFSRKDSFVTHRA
Links
Other
C2H2 ZF
family TFs
Other
Vitis vinifera
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0327s00220
Populus trichocarpa
POPTR_0327s00220
I
0.827
cassava21529.m1
Manihot esculenta
cassava21529.m1
I
0.827
TCM_008261
Theobroma cacao
TCM_008261
I
0.827
Gorai.005G198100
Gossypium raimondii
Gorai.005G198100
I
0.827
POPTR_0001s12770
Populus trichocarpa
POPTR_0001s12770
I
0.827
Eucgr.B03566
Eucalyptus grandis
Eucgr.B03566
I
0.821
GLYMA11G15950
Glycine max
GLYMA11G15950
I
0.807
30128.m008580
Ricinus communis
30128.m008580
I
0.807
AtIDD12
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_6003159
I
0.802
Carubv10001008m.g
Capsella rubella
Carubv10001008m.g
I
0.802
Bostr.2983s0191
Boechera stricta
Bostr.2983s0191
I
0.802
PGSC0003DMG400003372
Solanum tuberosum
PGSC0003DMG400003372
I
0.802
Cagra.0635s0013
Capsella grandiflora
Cagra.0635s0013
I
0.802
Solyc06g075250.2
Solanum lycopersicum
Solyc06g075250.2
I
0.802
PK25985.1
Cannabis sativa
PK25985.1
I
0.802
OLONG_013811
Oryza longistaminata
OLONG_013811
I
0.801
TRIUR3_32694
Triticum urartu
TRIUR3_32694
I
0.801
OGLUM02G18620
Oryza glumaepatula
OGLUM02G18620
I
0.801
OB02G26130
Oryza brachyantha
OB02G26130
I
0.801
LPERR02G14730
Leersia perrieri
LPERR02G14730
I
0.801
ONIVA02G20290
Oryza nivara
ONIVA02G20290
I
0.801
OBART02G18320
Oryza barthii
OBART02G18320
I
0.801
Traes_4DL_DF1F43E16
Triticum aestivum
Traes_4DL_DF1F43E16
I
0.801
OS02G0518500
Oryza sativa
OS02G0518500
I
0.801
Si019690m.g
Setaria italica
Si019690m.g
I
0.801
ORUFI02G19290
Oryza rufipogon
ORUFI02G19290
I
0.801
ORGLA02G0157900
Oryza glaberrima
ORGLA02G0157900
I
0.801
Traes_4AS_F7A905B43
Triticum aestivum
Traes_4AS_F7A905B43
I
0.801
OPUNC02G16560
Oryza punctata
OPUNC02G16560
I
0.801
Sb04g021440
Sorghum bicolor
Sb04g021440
I
0.801
OMERI02G18510
Oryza meridionalis
OMERI02G18510
I
0.801
BRADI3G44520
Brachypodium distachyon
BRADI3G44520
I
0.801
Pavir.Ab01787
Panicum virgatum
Pavir.Ab01787
I
0.801
Pavir.Aa01904
Panicum virgatum
Pavir.Aa01904
I
0.801
F775_04344
Aegilops tauschii
F775_04344
I
0.801
BGIOSGA006371
Oryza indica
BGIOSGA006371
I
0.801
GRMZM2G320287
Zea mays
GRMZM2G320287
I
0.801
GLYMA12G29370
Glycine max
GLYMA12G29370
I
0.798
Traes_4BL_38E55D7B4
Triticum aestivum
Traes_4BL_38E55D7B4
I
0.796
PGSC0003DMG400019342
Solanum tuberosum
PGSC0003DMG400019342
I
0.794
Solyc09g065670.2
Solanum lycopersicum
Solyc09g065670.2
I
0.794
SapurV1A.0376s0110
Salix purpurea
SapurV1A.0376s0110
I
0.788
SapurV1A.0444s0180
Salix purpurea
SapurV1A.0444s0180
I
0.788
POPTR_0005s23660
Populus trichocarpa
POPTR_0005s23660
I
0.788
Eucgr.B01471
Eucalyptus grandis
Eucgr.B01471
I
0.788
Bo2g167740
Brassica oleracea
Bo2g167740
I
0.784
mgf001929m
Mimulus guttatus
mgf001929m
I
0.784
Lus10036116.g
Linum usitatissimum
Lus10036116.g
I
0.784
GLYMA12G07510
Glycine max
GLYMA12G07510
I
0.784
MTR_2g093960
Medicago truncatula
MTR_2g093960
I
0.784
Lus10007409.g
Linum usitatissimum
Lus10007409.g
I
0.784
VIT_06s0004g03070
Vitis vinifera
VIT_06s0004g03070
I
0.778
TCM_041053
Theobroma cacao
TCM_041053
I
0.778
orange1.1g011146m.g
Citrus sinensis
orange1.1g011146m.g
I
0.778
29643.m000323
Ricinus communis
29643.m000323
I
0.778
Solyc11g069240.1
Solanum lycopersicum
Solyc11g069240.1
I
0.778
Solyc02g062940.2
Solanum lycopersicum
Solyc02g062940.2
I
0.778
Cla005124
Citrullus lanatus
Cla005124
I
0.778
cassava6007.valid.m1
Manihot esculenta
cassava6007.valid.m1
I
0.778
Ca_14587
Cicer arietinum
Ca_14587
I
0.778
Cucsa.222420
Cucumis sativus
Cucsa.222420
I
0.778
PGSC0003DMG400008110
Solanum tuberosum
PGSC0003DMG400008110
I
0.778
Bra038293
Brassica rapa
Bra038293
I
0.778
gene04812-v1.0-hybrid
Fragaria vesca
gene04812-v1.0-hybrid
I
0.778
Gorai.006G120000
Gossypium raimondii
Gorai.006G120000
I
0.778
Gorai.004G076800
Gossypium raimondii
Gorai.004G076800
I
0.778
Gorai.001G131000
Gossypium raimondii
Gorai.001G131000
I
0.778
MTR_4g059870
Medicago truncatula
MTR_4g059870
I
0.778
cassava832.valid.m1
Manihot esculenta
cassava832.valid.m1
I
0.778
Eucgr.J00939
Eucalyptus grandis
Eucgr.J00939
I
0.778
MDP0000233477
Malus domestica
MDP0000233477
I
0.778
PGSC0003DMG400015498
Solanum tuberosum
PGSC0003DMG400015498
I
0.778
Ciclev10028294m.g
Citrus clementina
Ciclev10028294m.g
I
0.778
BRADI5G08537
Brachypodium distachyon
BRADI5G08537
I
0.777
gene20264-v1.0-hybrid
Fragaria vesca
gene20264-v1.0-hybrid
I
0.774
PK06347.1
Cannabis sativa
PK06347.1
I
0.774
Cla018101
Citrullus lanatus
Cla018101
I
0.774
Cucsa.306990
Cucumis sativus
Cucsa.306990
I
0.774
Cucsa.084240
Cucumis sativus
Cucsa.084240
I
0.774
Pm030100
Prunus mume
Pm030100
I
0.774
Pm020252
Prunus mume
Pm020252
I
0.774
MDP0000319344
Malus domestica
MDP0000319344
I
0.774
Cla015029
Citrullus lanatus
Cla015029
I
0.774
Ca_07799
Cicer arietinum
Ca_07799
I
0.774
PRUPE_ppa003849mg
Prunus persica
PRUPE_ppa003849mg
I
0.774
PRUPE_ppa005468mg
Prunus persica
PRUPE_ppa005468mg
I
0.774
GSMUA_Achr11G07460_001
Musa acuminata
GSMUA_Achr11G07460_001
I
0.774
mgf017113m
Mimulus guttatus
mgf017113m
I
0.773
Bo9g021710
Brassica oleracea
Bo9g021710
I
0.773
LjSGA_017927.1
Lotus japonicus
LjSGA_017927.1
I
0.773
orange1.1g008017m.g
Citrus sinensis
orange1.1g008017m.g
I
0.772
Ciclev10007837m.g
Citrus clementina
Ciclev10007837m.g
I
0.772
GLYMA13G20231
Glycine max
GLYMA13G20231
I
0.769
GLYMA10G05880
Glycine max
GLYMA10G05880
I
0.769
GLYMA10G03541
Glycine max
GLYMA10G03541
I
0.769
Gorai.006G167600
Gossypium raimondii
Gorai.006G167600
I
0.769
Gorai.009G418600
Gossypium raimondii
Gorai.009G418600
I
0.769
Gorai.008G002200
Gossypium raimondii
Gorai.008G002200
I
0.769
Gorai.007G139800
Gossypium raimondii
Gorai.007G139800
I
0.769
GLYMA19G36430
Glycine max
GLYMA19G36430
I
0.769
SapurV1A.5138s0010
Salix purpurea
SapurV1A.5138s0010
I
0.769
Thhalv10013267m.g
Eutrema salsugineum
Thhalv10013267m.g
I
0.769
VIT_00s0179g00170
Vitis vinifera
VIT_00s0179g00170
I
0.769
evm.TU.supercontig_45.59
Carica papaya
evm.TU.supercontig_45.59
I
0.769
evm.TU.supercontig_52.117
Carica papaya
evm.TU.supercontig_52.117
I
0.769
GLYMA03G31390
Glycine max
GLYMA03G31390
I
0.769
gene09703-v1.0-hybrid
Fragaria vesca
gene09703-v1.0-hybrid
I
0.769
Eucgr.A01159
Eucalyptus grandis
Eucgr.A01159
I
0.769
MDP0000122321
Malus domestica
MDP0000122321
I
0.769
SapurV1A.0006s1510
Salix purpurea
SapurV1A.0006s1510
I
0.769
Bo9g183170
Brassica oleracea
Bo9g183170
I
0.769
orange1.1g011807m.g
Citrus sinensis
orange1.1g011807m.g
I
0.769
SapurV1A.0112s0130
Salix purpurea
SapurV1A.0112s0130
I
0.769
SapurV1A.0209s0070
Salix purpurea
SapurV1A.0209s0070
I
0.769
Bo2g003880
Brassica oleracea
Bo2g003880
I
0.769
Bo2g100660
Brassica oleracea
Bo2g100660
I
0.769
orange1.1g011334m.g
Citrus sinensis
orange1.1g011334m.g
I
0.769
Bra005741
Brassica rapa
Bra005741
I
0.769
MDP0000243664
Malus domestica
MDP0000243664
I
0.769
Bra018535
Brassica rapa
Bra018535
I
0.769
Ciclev10011592m.g
Citrus clementina
Ciclev10011592m.g
I
0.769
Bra009549
Brassica rapa
Bra009549
I
0.769
MDP0000480293
Malus domestica
MDP0000480293
I
0.769
MDP0000826293
Malus domestica
MDP0000826293
I
0.769
MDP0000688613
Malus domestica
MDP0000688613
I
0.769
JKD
Arabidopsis lyrata
fgenesh2_kg.6__219__AT5G03150.1
I
0.769
Ciclev10019959m.g
Citrus clementina
Ciclev10019959m.g
I
0.769
cassava20187.m1
Manihot esculenta
cassava20187.m1
I
0.769
JKD
Vitis vinifera
VIT_08s0040g02100
I
0.769
30078.m002347
Ricinus communis
30078.m002347
I
0.769
cassava20362.m1
Manihot esculenta
cassava20362.m1
I
0.769
PRUPE_ppa004548mg
Prunus persica
PRUPE_ppa004548mg
I
0.769
Thhalv10028701m.g
Eutrema salsugineum
Thhalv10028701m.g
I
0.769
cassava26767.m1
Manihot esculenta
cassava26767.m1
I
0.769
cassava24590.valid.m1
Manihot esculenta
cassava24590.valid.m1
I
0.769
29883.m001956
Ricinus communis
29883.m001956
I
0.769
chr1.CM0322.120.nc
Lotus japonicus
chr1.CM0322.120.nc
I
0.769
Ca_17124
Cicer arietinum
Ca_17124
I
0.769
TCM_004271
Theobroma cacao
TCM_004271
I
0.769
AMTR_s00002p00270520
Amborella trichopoda
AMTR_s00002p00270520
I
0.769
Solyc10g084180.1
Solanum lycopersicum
Solyc10g084180.1
I
0.769
Solyc09g007550.2
Solanum lycopersicum
Solyc09g007550.2
I
0.769
LjT03L03.50.nd
Lotus japonicus
LjT03L03.50.nd
I
0.769
Pm001002
Prunus mume
Pm001002
I
0.769
Cla018558
Citrullus lanatus
Cla018558
I
0.769
POPTR_0016s08990
Populus trichocarpa
POPTR_0016s08990
I
0.769
TCM_022127
Theobroma cacao
TCM_022127
I
0.769
Aquca_049_00144
Aquilegia coerulea
Aquca_049_00144
I
0.769
Aquca_027_00051
Aquilegia coerulea
Aquca_027_00051
I
0.769
POPTR_0006s13130
Populus trichocarpa
POPTR_0006s13130
I
0.769
Bostr.2128s0141
Boechera stricta
Bostr.2128s0141
I
0.769
JKD
Arabidopsis thaliana
AT5G03150
D
0.769
Cagra.1597s0004
Capsella grandiflora
Cagra.1597s0004
I
0.769
PK18288.1
Cannabis sativa
PK18288.1
I
0.769
POPTR_0002s04880
Populus trichocarpa
POPTR_0002s04880
I
0.769
Carubv10000736m.g
Capsella rubella
Carubv10000736m.g
I
0.769
AMTR_s00007p00061550
Amborella trichopoda
AMTR_s00007p00061550
I
0.769
PGSC0003DMG400010478
Solanum tuberosum
PGSC0003DMG400010478
I
0.769
mgf003691m
Mimulus guttatus
mgf003691m
I
0.769
PGSC0003DMG400001747
Solanum tuberosum
PGSC0003DMG400001747
I
0.769
GLYMA19G42280
Glycine max
GLYMA19G42280
I
0.768
GLYMA19G34220
Glycine max
GLYMA19G34220
I
0.768
Solyc07g053570.2
Solanum lycopersicum
Solyc07g053570.2
I
0.764
GSMUA_Achr11G05700_001
Musa acuminata
GSMUA_Achr11G05700_001
I
0.764
GSMUA_Achr4G07200_001
Musa acuminata
GSMUA_Achr4G07200_001
I
0.764
SapurV1A.2164s0010
Salix purpurea
SapurV1A.2164s0010
I
0.763
Cucsa.181990
Cucumis sativus
Cucsa.181990
I
0.763
SapurV1A.1019s0030
Salix purpurea
SapurV1A.1019s0030
I
0.763
id1
Zea mays
GRMZM2G011357
D
0.762
Sb01g021480
Sorghum bicolor
Sb01g021480
I
0.762
Si036003m.g
Setaria italica
Si036003m.g
I
0.762
Solyc01g099340.2
Solanum lycopersicum
Solyc01g099340.2
I
0.759
Ca_02459
Cicer arietinum
Ca_02459
I
0.759
PGSC0003DMG400024700
Solanum tuberosum
PGSC0003DMG400024700
I
0.759
PGSC0003DMG400009382
Solanum tuberosum
PGSC0003DMG400009382
I
0.759
Aquca_007_00164
Aquilegia coerulea
Aquca_007_00164
I
0.759
MTR_2g090745
Medicago truncatula
MTR_2g090745
I
0.759
chr5.CM0299.500.nd
Lotus japonicus
chr5.CM0299.500.nd
I
0.758