CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LjSGA_017927.1
(
Lotus japonicus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
LjSGA_017927.1
T146369_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.764
0.951
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_017927.1
C2H2 ZF
83
104
WKCEKCSKKYAVHSDWKAHAKI
LjSGA_017927.1
C2H2 ZF
105
129
CGTREYKCDCGTLFSRKDSFITHRA
Links
Other
C2H2 ZF
family TFs
Other
Lotus japonicus
TFs
202 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10001008m.g
Capsella rubella
Carubv10001008m.g
I
0.797
Bostr.2983s0191
Boechera stricta
Bostr.2983s0191
I
0.797
AtIDD12
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_6003159
I
0.797
PK25985.1
Cannabis sativa
PK25985.1
I
0.797
Cagra.0635s0013
Capsella grandiflora
Cagra.0635s0013
I
0.797
PGSC0003DMG400003372
Solanum tuberosum
PGSC0003DMG400003372
I
0.797
Solyc06g075250.2
Solanum lycopersicum
Solyc06g075250.2
I
0.797
Bra038293
Brassica rapa
Bra038293
I
0.792
BGIOSGA003803
Oryza indica
BGIOSGA003803
I
0.792
Pavir.Ea01893
Panicum virgatum
Pavir.Ea01893
I
0.792
30128.m008580
Ricinus communis
30128.m008580
I
0.792
GLYMA11G15950
Glycine max
GLYMA11G15950
I
0.792
Traes_4BL_38E55D7B4
Triticum aestivum
Traes_4BL_38E55D7B4
I
0.791
GSMUA_Achr2G08910_001
Musa acuminata
GSMUA_Achr2G08910_001
I
0.788
Traes_4AS_F7A905B43
Triticum aestivum
Traes_4AS_F7A905B43
I
0.786
OB02G26130
Oryza brachyantha
OB02G26130
I
0.786
LPERR02G14730
Leersia perrieri
LPERR02G14730
I
0.786
Sb04g021440
Sorghum bicolor
Sb04g021440
I
0.786
Pavir.Aa01904
Panicum virgatum
Pavir.Aa01904
I
0.786
Traes_4DL_DF1F43E16
Triticum aestivum
Traes_4DL_DF1F43E16
I
0.786
OBART02G18320
Oryza barthii
OBART02G18320
I
0.786
OGLUM02G18620
Oryza glumaepatula
OGLUM02G18620
I
0.786
ORUFI02G19290
Oryza rufipogon
ORUFI02G19290
I
0.786
ORGLA02G0157900
Oryza glaberrima
ORGLA02G0157900
I
0.786
OPUNC02G16560
Oryza punctata
OPUNC02G16560
I
0.786
ONIVA02G20290
Oryza nivara
ONIVA02G20290
I
0.786
Si019690m.g
Setaria italica
Si019690m.g
I
0.786
OLONG_013811
Oryza longistaminata
OLONG_013811
I
0.786
OMERI02G18510
Oryza meridionalis
OMERI02G18510
I
0.786
Pavir.Ab01787
Panicum virgatum
Pavir.Ab01787
I
0.786
GRMZM2G320287
Zea mays
GRMZM2G320287
I
0.786
BRADI3G44520
Brachypodium distachyon
BRADI3G44520
I
0.786
OS02G0518500
Oryza sativa
OS02G0518500
I
0.786
F775_04344
Aegilops tauschii
F775_04344
I
0.786
TRIUR3_32694
Triticum urartu
TRIUR3_32694
I
0.786
BGIOSGA006371
Oryza indica
BGIOSGA006371
I
0.786
Gorai.001G131000
Gossypium raimondii
Gorai.001G131000
I
0.774
Cucsa.222420
Cucumis sativus
Cucsa.222420
I
0.774
Gorai.004G076800
Gossypium raimondii
Gorai.004G076800
I
0.774
cassava6007.valid.m1
Manihot esculenta
cassava6007.valid.m1
I
0.774
PGSC0003DMG400008110
Solanum tuberosum
PGSC0003DMG400008110
I
0.774
29643.m000323
Ricinus communis
29643.m000323
I
0.774
Carubv10017213m.g
Capsella rubella
Carubv10017213m.g
I
0.774
Ciclev10028294m.g
Citrus clementina
Ciclev10028294m.g
I
0.774
gene04812-v1.0-hybrid
Fragaria vesca
gene04812-v1.0-hybrid
I
0.774
Cla005124
Citrullus lanatus
Cla005124
I
0.774
Solyc11g069240.1
Solanum lycopersicum
Solyc11g069240.1
I
0.774
Ca_14587
Cicer arietinum
Ca_14587
I
0.774
VIT_06s0004g03070
Vitis vinifera
VIT_06s0004g03070
I
0.774
Eucgr.J00939
Eucalyptus grandis
Eucgr.J00939
I
0.774
Gorai.006G120000
Gossypium raimondii
Gorai.006G120000
I
0.774
orange1.1g011146m.g
Citrus sinensis
orange1.1g011146m.g
I
0.774
MTR_4g059870
Medicago truncatula
MTR_4g059870
I
0.774
TCM_041053
Theobroma cacao
TCM_041053
I
0.774
cassava832.valid.m1
Manihot esculenta
cassava832.valid.m1
I
0.774
Cagra.28200s0002
Capsella grandiflora
Cagra.28200s0002
I
0.774
POPTR_0001s12770
Populus trichocarpa
POPTR_0001s12770
I
0.773
POPTR_0327s00220
Populus trichocarpa
POPTR_0327s00220
I
0.773
Gorai.005G198100
Gossypium raimondii
Gorai.005G198100
I
0.773
TCM_008261
Theobroma cacao
TCM_008261
I
0.773
cassava21529.m1
Manihot esculenta
cassava21529.m1
I
0.773
VIT_09s0054g01820
Vitis vinifera
VIT_09s0054g01820
I
0.773
BRADI5G08537
Brachypodium distachyon
BRADI5G08537
I
0.772
Bostr.18473s0395
Boechera stricta
Bostr.18473s0395
I
0.768
mgf001929m
Mimulus guttatus
mgf001929m
I
0.768
Lus10007409.g
Linum usitatissimum
Lus10007409.g
I
0.768
Sb03g025790
Sorghum bicolor
Sb03g025790
I
0.768
Si001287m.g
Setaria italica
Si001287m.g
I
0.768
Si001504m.g
Setaria italica
Si001504m.g
I
0.768
scaffold_501386.1
Arabidopsis lyrata
scaffold_501386.1
I
0.768
OS01G0572300
Oryza sativa
OS01G0572300
I
0.768
OGLUM01G23770
Oryza glumaepatula
OGLUM01G23770
I
0.768
Bra033840
Brassica rapa
Bra033840
I
0.768
Bo3g129830
Brassica oleracea
Bo3g129830
I
0.768
OMERI01G18610
Oryza meridionalis
OMERI01G18610
I
0.768
Bo2g167740
Brassica oleracea
Bo2g167740
I
0.768
OBART01G20150
Oryza barthii
OBART01G20150
I
0.768
Bo9g021710
Brassica oleracea
Bo9g021710
I
0.768
GRMZM2G177693
Zea mays
GRMZM2G177693
I
0.768
LPERR01G17290
Leersia perrieri
LPERR01G17290
I
0.768
GLYMA12G07510
Glycine max
GLYMA12G07510
I
0.768
Thhalv10016023m.g
Eutrema salsugineum
Thhalv10016023m.g
I
0.768
GRMZM2G027333
Zea mays
GRMZM2G027333
I
0.768
ONIVA01G22710
Oryza nivara
ONIVA01G22710
I
0.768
Bo1g065210
Brassica oleracea
Bo1g065210
I
0.768
Thhalv10002526m.g
Eutrema salsugineum
Thhalv10002526m.g
I
0.768
IDD9
Arabidopsis thaliana
AT3G45260
D
0.768
ORUFI01G22710
Oryza rufipogon
ORUFI01G22710
I
0.768
Lus10036116.g
Linum usitatissimum
Lus10036116.g
I
0.768
OPUNC01G20510
Oryza punctata
OPUNC01G20510
I
0.768
BRADI3G26910
Brachypodium distachyon
BRADI3G26910
N
0.767
orange1.1g008017m.g
Citrus sinensis
orange1.1g008017m.g
I
0.767
Ciclev10007837m.g
Citrus clementina
Ciclev10007837m.g
I
0.767
Eucgr.B02487
Eucalyptus grandis
Eucgr.B02487
I
0.767
Eucgr.B03566
Eucalyptus grandis
Eucgr.B03566
I
0.767
Ciclev10019959m.g
Citrus clementina
Ciclev10019959m.g
I
0.764
Thhalv10003218m.g
Eutrema salsugineum
Thhalv10003218m.g
I
0.764
Ciclev10011592m.g
Citrus clementina
Ciclev10011592m.g
I
0.764
Cagra.1597s0004
Capsella grandiflora
Cagra.1597s0004
I
0.764
Aquca_049_00144
Aquilegia coerulea
Aquca_049_00144
I
0.764
Aquca_027_00051
Aquilegia coerulea
Aquca_027_00051
I
0.764
LjT03L03.50.nd
Lotus japonicus
LjT03L03.50.nd
I
0.764
chr1.CM0322.120.nc
Lotus japonicus
chr1.CM0322.120.nc
I
0.764
PK18288.1
Cannabis sativa
PK18288.1
I
0.764
Carubv10000736m.g
Capsella rubella
Carubv10000736m.g
I
0.764
Thhalv10028701m.g
Eutrema salsugineum
Thhalv10028701m.g
I
0.764
Bostr.2128s0141
Boechera stricta
Bostr.2128s0141
I
0.764
Thhalv10013267m.g
Eutrema salsugineum
Thhalv10013267m.g
I
0.764
SapurV1A.0006s1510
Salix purpurea
SapurV1A.0006s1510
I
0.764
mgf023281m
Mimulus guttatus
mgf023281m
I
0.764
MDP0000122321
Malus domestica
MDP0000122321
I
0.764
MDP0000243664
Malus domestica
MDP0000243664
I
0.764
MDP0000480293
Malus domestica
MDP0000480293
I
0.764
Gorai.006G167600
Gossypium raimondii
Gorai.006G167600
I
0.764
Gorai.007G139800
Gossypium raimondii
Gorai.007G139800
I
0.764
Lus10026497.g
Linum usitatissimum
Lus10026497.g
I
0.764
Gorai.009G418600
Gossypium raimondii
Gorai.009G418600
I
0.764
Gorai.008G002200
Gossypium raimondii
Gorai.008G002200
I
0.764
MDP0000688613
Malus domestica
MDP0000688613
I
0.764
MDP0000826293
Malus domestica
MDP0000826293
I
0.764
Lus10019927.g
Linum usitatissimum
Lus10019927.g
I
0.764
SapurV1A.0112s0130
Salix purpurea
SapurV1A.0112s0130
I
0.764
SapurV1A.0209s0070
Salix purpurea
SapurV1A.0209s0070
I
0.764
SapurV1A.5138s0010
Salix purpurea
SapurV1A.5138s0010
I
0.764
orange1.1g011807m.g
Citrus sinensis
orange1.1g011807m.g
I
0.764
evm.TU.supercontig_45.59
Carica papaya
evm.TU.supercontig_45.59
I
0.764
gene09703-v1.0-hybrid
Fragaria vesca
gene09703-v1.0-hybrid
I
0.764
evm.TU.supercontig_52.117
Carica papaya
evm.TU.supercontig_52.117
I
0.764
orange1.1g011334m.g
Citrus sinensis
orange1.1g011334m.g
I
0.764
Eucgr.A01159
Eucalyptus grandis
Eucgr.A01159
I
0.764
VIT_00s0179g00170
Vitis vinifera
VIT_00s0179g00170
I
0.764
PGSC0003DMG400010478
Solanum tuberosum
PGSC0003DMG400010478
I
0.764
PGSC0003DMG400001747
Solanum tuberosum
PGSC0003DMG400001747
I
0.764
GLYMA19G36430
Glycine max
GLYMA19G36430
I
0.764
GLYMA13G20231
Glycine max
GLYMA13G20231
I
0.764
POPTR_0002s04880
Populus trichocarpa
POPTR_0002s04880
I
0.764
POPTR_0016s08990
Populus trichocarpa
POPTR_0016s08990
I
0.764
TCM_004271
Theobroma cacao
TCM_004271
I
0.764
Solyc10g084180.1
Solanum lycopersicum
Solyc10g084180.1
I
0.764
Solyc09g007550.2
Solanum lycopersicum
Solyc09g007550.2
I
0.764
PRUPE_ppa004548mg
Prunus persica
PRUPE_ppa004548mg
I
0.764
GLYMA10G05880
Glycine max
GLYMA10G05880
I
0.764
GLYMA10G03541
Glycine max
GLYMA10G03541
I
0.764
Bo2g100660
Brassica oleracea
Bo2g100660
I
0.764
Bo2g003880
Brassica oleracea
Bo2g003880
I
0.764
JKD
Arabidopsis thaliana
AT5G03150
D
0.764
AMTR_s00007p00061550
Amborella trichopoda
AMTR_s00007p00061550
I
0.764
Bo9g183170
Brassica oleracea
Bo9g183170
I
0.764
Bra005741
Brassica rapa
Bra005741
I
0.764
GLYMA03G31390
Glycine max
GLYMA03G31390
I
0.764
JKD
Arabidopsis lyrata
fgenesh2_kg.6__219__AT5G03150.1
I
0.764
Bra018535
Brassica rapa
Bra018535
I
0.764
Bra009549
Brassica rapa
Bra009549
I
0.764
TCM_022127
Theobroma cacao
TCM_022127
I
0.764
POPTR_0006s13130
Populus trichocarpa
POPTR_0006s13130
I
0.764
Cla018558
Citrullus lanatus
Cla018558
I
0.764
cassava24590.valid.m1
Manihot esculenta
cassava24590.valid.m1
I
0.764
cassava26767.m1
Manihot esculenta
cassava26767.m1
I
0.764
cassava20187.m1
Manihot esculenta
cassava20187.m1
I
0.764
Pm001002
Prunus mume
Pm001002
I
0.764
29883.m001956
Ricinus communis
29883.m001956
I
0.764
30078.m002347
Ricinus communis
30078.m002347
I
0.764
Ca_17124
Cicer arietinum
Ca_17124
I
0.764
cassava20362.m1
Manihot esculenta
cassava20362.m1
I
0.764
JKD
Vitis vinifera
VIT_08s0040g02100
I
0.764
mgf003691m
Mimulus guttatus
mgf003691m
I
0.764
AMTR_s00002p00270520
Amborella trichopoda
AMTR_s00002p00270520
I
0.764
PGSC0003DMG400015498
Solanum tuberosum
PGSC0003DMG400015498
I
0.763
MDP0000233477
Malus domestica
MDP0000233477
I
0.763
Solyc02g062940.2
Solanum lycopersicum
Solyc02g062940.2
I
0.763
GLYMA19G34220
Glycine max
GLYMA19G34220
I
0.763
OMERI10G07530
Oryza meridionalis
OMERI10G07530
I
0.761
OB01G16060
Oryza brachyantha
OB01G16060
I
0.759
Pm020252
Prunus mume
Pm020252
I
0.759
Pm030100
Prunus mume
Pm030100
I
0.759
BGIOSGA002939
Oryza indica
BGIOSGA002939
I
0.759
Cucsa.306990
Cucumis sativus
Cucsa.306990
I
0.759
OB01G29940
Oryza brachyantha
OB01G29940
I
0.759
PK06347.1
Cannabis sativa
PK06347.1
I
0.759
Cucsa.084240
Cucumis sativus
Cucsa.084240
I
0.759
OMERI01G06230
Oryza meridionalis
OMERI01G06230
I
0.759
Cla015029
Citrullus lanatus
Cla015029
I
0.759
mgf008439m
Mimulus guttatus
mgf008439m
I
0.759
PRUPE_ppa003849mg
Prunus persica
PRUPE_ppa003849mg
I
0.759
PRUPE_ppa005468mg
Prunus persica
PRUPE_ppa005468mg
I
0.759
Ca_07799
Cicer arietinum
Ca_07799
I
0.759
gene20264-v1.0-hybrid
Fragaria vesca
gene20264-v1.0-hybrid
I
0.759
OBART01G06050
Oryza barthii
OBART01G06050
I
0.759
Cla018101
Citrullus lanatus
Cla018101
I
0.759
MDP0000319344
Malus domestica
MDP0000319344
I
0.759
OGLUM01G06620
Oryza glumaepatula
OGLUM01G06620
I
0.759
OPUNC01G05880
Oryza punctata
OPUNC01G05880
I
0.759
ORGLA01G0057600
Oryza glaberrima
ORGLA01G0057600
I
0.759
OS01G0195000
Oryza sativa
OS01G0195000
I
0.759
evm.TU.supercontig_48.75
Carica papaya
evm.TU.supercontig_48.75
I
0.759
mgf017113m
Mimulus guttatus
mgf017113m
I
0.758
mgf018401m
Mimulus guttatus
mgf018401m
I
0.758
Cucsa.181990
Cucumis sativus
Cucsa.181990
I
0.758
SapurV1A.2164s0010
Salix purpurea
SapurV1A.2164s0010
I
0.758
PGSC0003DMG400005147
Solanum tuberosum
PGSC0003DMG400005147
I
0.758
SapurV1A.1019s0030
Salix purpurea
SapurV1A.1019s0030
I
0.758
Solyc04g080130.2
Solanum lycopersicum
Solyc04g080130.2
I
0.758