CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pg.scaffold_169000072
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pg.scaffold_169000072
T139234_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gli3
M01022_2.00
Mus musculus
NGACCACCCNN
NNGGGTGGTCN
PBM
Peterson et al.(2012)
Gli3
0.811
0.946
Gli3
M08023_2.00
Mus musculus
RGVCCACCCAS
STGGGTGGBCY
ChIP-seq
Chen et al.(2011)
GSE11062_Gli3
0.811
0.946
Gli3
M09512_2.00
Mus musculus
RGACCACCCASR
YSTGGGTGGTCY
Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077
0.811
0.946
GLI3
M04416_2.00
Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB
SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX
0.765
0.938
GLI3
M02642_2.00
Homo sapiens
GACCACCCANK
MNTGGGTGGTC
SELEX
Hallikas et al.(2006)
GLI3
0.765
0.938
GLI3
M08875_2.00
Homo sapiens
VRACCACCCAV
BTGGGTGGTYB
Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B
0.765
0.938
GLI3
M10167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_01
0.765
0.938
GLI3
M10168_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GLI3_Q5_01
0.765
0.938
GLI3
M04417_2.00
Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG
SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX
0.765
0.938
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pg.scaffold_169000072
C2H2 ZF
452
477
TNCHWDGCSKEFDTQDQLVHHINNDH
fgenesh2_pg.scaffold_169000072
C2H2 ZF
485
512
FVCRWSECTREQKPFKAQYMLVVHMRRH
fgenesh2_pg.scaffold_169000072
C2H2 ZF
537
557
FEGCNKAYSRLENLKTHLRSH
fgenesh2_pg.scaffold_169000072
C2H2 ZF
563
588
YVCEHEGCNKAFSNASDRAKHQNRTH
fgenesh2_pg.scaffold_169000072
C2H2 ZF
594
619
YVCKIPGCTKRYTDPSSLRKHVKTVH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_pg.scaffold_137000068
Branchiostoma floridae
fgenesh2_pg.scaffold_137000068
I
0.827
Gli3
Rattus norvegicus
ENSRNOG00000014395
I
0.811
Gli3
Mus musculus
ENSMUSG00000021318
D
0.811
ENSSTOG00000020844
Ictidomys tridecemlineatus
ENSSTOG00000020844
I
0.811
GLI3
Cavia porcellus
ENSCPOG00000013233
I
0.811
ENSGMOG00000007975
Gadus morhua
ENSGMOG00000007975
I
0.809
gli1
Takifugu rubripes
ENSTRUG00000014998
I
0.809
gli1
Gasterosteus aculeatus
ENSGACG00000006458
I
0.809
ENSLOCG00000002028
Lepisosteus oculatus
ENSLOCG00000002028
I
0.808
ENSONIG00000004472
Oreochromis niloticus
ENSONIG00000004472
I
0.808
ENSPFOG00000006269
Poecilia formosa
ENSPFOG00000006269
I
0.807
ENSXMAG00000017965
Xiphophorus maculatus
ENSXMAG00000017965
I
0.807
ENSONIG00000005084
Oreochromis niloticus
ENSONIG00000005084
I
0.807
gli1
Oryzias latipes
ENSORLG00000005455
I
0.807
gli1
Tetraodon nigroviridis
ENSTNIG00000007058
I
0.806
ENSPFOG00000014778
Poecilia formosa
ENSPFOG00000014778
I
0.806
ENSGMOG00000010335
Gadus morhua
ENSGMOG00000010335
I
0.806
ENSONIG00000003608
Oreochromis niloticus
ENSONIG00000003608
I
0.806
gli2a
Danio rerio
ENSDARG00000025641
I
0.804
gli2.S
Xenopus laevis
XB-GENE-6251939
I
0.804
gli2.L
Xenopus laevis
XB-GENE-17342592
I
0.800
gli2b
Takifugu rubripes
ENSTRUG00000001954
I
0.799
gli2b
Gasterosteus aculeatus
ENSGACG00000001547
I
0.799
gli3
Danio rerio
ENSDARG00000052131
I
0.767
ENSPPYG00000017613
Pongo abelii
ENSPPYG00000017613
I
0.765
GLI3
Pan troglodytes
ENSPTRG00000019117
I
0.765
GLI3
Pteropus vampyrus
ENSPVAG00000015920
I
0.765
ENSPSIG00000017804
Pelodiscus sinensis
ENSPSIG00000017804
I
0.765
GLI3
Procavia capensis
ENSPCAG00000015092
I
0.765
Gfo_R007869
Geospiza fortis
Gfo_R007869
I
0.765
GLI3
Bos taurus
ENSBTAG00000010671
I
0.765
GLI3
Equus caballus
ENSECAG00000009281
I
0.765
ENSPANG00000014545
Papio anubis
ENSPANG00000014545
I
0.765
ENSSHAG00000009727
Sarcophilus harrisii
ENSSHAG00000009727
I
0.765
ENSAPLG00000004361
Anas platyrhynchos
ENSAPLG00000004361
I
0.765
ENSAMXG00000002477
Astyanax mexicanus
ENSAMXG00000002477
I
0.765
Afo_R007816
Aptenodytes forsteri
Afo_R007816
I
0.765
Aan_R014715
Calypte anna
Aan_R014715
I
0.765
Brh_R008256
Buceros rhinoceros
Brh_R008256
I
0.765
Cmyd_10007839
Chelonia mydas
Cmyd_10007839
I
0.765
ENSP00000379258
Macaca fascicularis
ENSP00000379258
I
0.765
GLI3
Anolis carolinensis
ENSACAG00000017547
I
0.765
Pvit_19093
Pogona vitticeps
Pvit_19093
I
0.765
GLI3
Otolemur garnettii
ENSOGAG00000012651
I
0.765
ENSAMEG00000008405
Ailuropoda melanoleuca
ENSAMEG00000008405
I
0.765
ENSTSYG00000009406
Tarsius syrichta
ENSTSYG00000009406
I
0.765
GLI3
Tursiops truncatus
ENSTTRG00000003628
I
0.765
GLI3
Tupaia belangeri
ENSTBEG00000006673
I
0.765
GLI3
Ochotona princeps
ENSOPRG00000011225
I
0.765
GLI3
Choloepus hoffmanni
ENSCHOG00000003774
I
0.765
GLI3
Homo sapiens
ENSG00000106571
D
0.765
GLI3
Oryctolagus cuniculus
ENSOCUG00000006563
I
0.765
gli3.L
Xenopus laevis
XB-GENE-865509
I
0.765
GLI3
Felis catus
ENSFCAG00000011989
I
0.765
GLI3
Loxodonta africana
ENSLAFG00000008944
I
0.765
ENSLACG00000017364
Latimeria chalumnae
ENSLACG00000017364
I
0.765
ENSGALG00000012329
Gallus gallus
ENSGALG00000012329
I
0.765
XP_002933449
Xenopus tropicalis
XP_002933449
I
0.765
GLI3
Gorilla gorilla
ENSGGOG00000002026
I
0.765
ENSCSAG00000015361
Chlorocebus sabaeus
ENSCSAG00000015361
I
0.765
GLI3
Callithrix jacchus
ENSCJAG00000007690
I
0.765
ENSMEUG00000013134
Macropus eugenii
ENSMEUG00000013134
I
0.765
GLI3
Dasypus novemcinctus
ENSDNOG00000049286
I
0.765
ENSNLEG00000003160
Nomascus leucogenys
ENSNLEG00000003160
I
0.765
XP_002933450
Xenopus tropicalis
XP_002933450
I
0.765
GLI3
Ornithorhynchus anatinus
ENSOANG00000010699
I
0.765
ENSOARG00000017420
Ovis aries
ENSOARG00000017420
I
0.765
ENSFALG00000005113
Ficedula albicollis
ENSFALG00000005113
I
0.765
GLI3
Canis familiaris
ENSCAFG00000003535
I
0.765
ENSMPUG00000018143
Mustela putorius furo
ENSMPUG00000018143
I
0.765
GLI3
Myotis lucifugus
ENSMLUG00000015711
I
0.765
GLI3
Meleagris gallopavo
ENSMGAG00000012277
I
0.765
GLI3
Macaca mulatta
ENSMMUG00000013614
I
0.765
GLI3
Monodelphis domestica
ENSMODG00000002714
I
0.765
GLI1
Anolis carolinensis
ENSACAG00000006541
I
0.763
Pvit_05813
Pogona vitticeps
Pvit_05813
I
0.763
gli2b
Danio rerio
ENSDARG00000020884
I
0.762
Ogr02489
Ophisaurus gracilis
Ogr02489
I
0.762
ENSAMXG00000003125
Astyanax mexicanus
ENSAMXG00000003125
I
0.762
GLI2
Anolis carolinensis
ENSACAG00000004133
I
0.762
Pvit_06470
Pogona vitticeps
Pvit_06470
I
0.762
ENSAMXG00000006646
Astyanax mexicanus
ENSAMXG00000006646
I
0.762
gli2b
Takifugu rubripes
ENSTRUG00000010444
I
0.762
Gfo_R013682
Geospiza fortis
Gfo_R013682
I
0.761
ENSAPLG00000005128
Anas platyrhynchos
ENSAPLG00000005128
I
0.761
Tal_R009020
Tyto alba
Tal_R009020
I
0.761
Tal_R006208
Tyto alba
Tal_R006208
I
0.760
ENSAMXG00000017236
Astyanax mexicanus
ENSAMXG00000017236
I
0.760
GLI2
Meleagris gallopavo
ENSMGAG00000011872
I
0.760
ENSAPLG00000015141
Anas platyrhynchos
ENSAPLG00000015141
I
0.760
ENSLOCG00000005938
Lepisosteus oculatus
ENSLOCG00000005938
I
0.760
GLI2
Gallus gallus
ENSGALG00000011630
I
0.760
ENSFALG00000013217
Ficedula albicollis
ENSFALG00000013217
I
0.760
ENSPSIG00000008752
Pelodiscus sinensis
ENSPSIG00000008752
I
0.760
GLI2
Taeniopygia guttata
ENSTGUG00000004599
I
0.760
Brh_R010932
Buceros rhinoceros
Brh_R010932
I
0.760
Cmyd_10009086
Chelonia mydas
Cmyd_10009086
I
0.760
Afo_R006826
Aptenodytes forsteri
Afo_R006826
I
0.760
Aan_R003640
Calypte anna
Aan_R003640
I
0.760
Gfo_R001212
Geospiza fortis
Gfo_R001212
I
0.760
ENSPFOG00000005116
Poecilia formosa
ENSPFOG00000005116
I
0.759
ENSXMAG00000006443
Xiphophorus maculatus
ENSXMAG00000006443
I
0.759