SNAPOd2T00002718001 (Oikopleura dioica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SNAPOd2T00002718001 T145224_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.790 0.880
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.790 0.880
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.790 0.880
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.790 0.880
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.790 0.880
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00002718001 C2H2 ZF 123 150
SNAPOd2T00002718001 C2H2 ZF 156 180
SNAPOd2T00002718001 C2H2 ZF 186 210
SNAPOd2T00002718001 C2H2 ZF 216 240

Links

Other C2H2 ZF family TFs
Other Oikopleura dioica TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.792
GH23039 Drosophila grimshawi FBgn0130496 I 0.790
AGAP001291 Anopheles gambiae AGAP001291 I 0.790
GG12590 Drosophila erecta FBgn0104878 I 0.790
GF18915 Drosophila ananassae FBgn0095929 I 0.790
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.790
GL21621 Drosophila persimilis FBgn0159214 I 0.790
GM10780 Drosophila sechellia FBgn0165726 I 0.790
KGM_22387 Danaus plexippus KGM_22387 I 0.790
GK13239 Drosophila willistoni FBgn0215248 I 0.790
GJ11051 Drosophila virilis FBgn0198317 I 0.790
GD19752 Drosophila simulans FBgn0191241 I 0.790
opa Drosophila melanogaster FBgn0003002 D 0.790
GI10245 Drosophila mojavensis FBgn0133010 I 0.790
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.787
NV11451 Nasonia vitripennis NV11451 I 0.787
TC010234 Tribolium castaneum TC010234 I 0.787
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.785
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.780
MDOA000052 Musca domestica MDOA000052 I 0.780
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.777
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.777
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.775
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.775
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.774
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.774
GB54250 Apis mellifera GB54250 I 0.772
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.772
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.772
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.772
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.772
zic6 Danio rerio ENSDARG00000071496 I 0.772
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.770
macho1 Ciona intestinalis ENSCING00000007968 I 0.770
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.770
HelroG77001 Helobdella robusta HelroG77001 N 0.769
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.765
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.763
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.763
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.763
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.763
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.763
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.763
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.763
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.763
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.763
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.763
ENSCING00000002517 Ciona intestinalis ENSCING00000002517 N 0.762
ENSCING00000000012 Ciona intestinalis ENSCING00000000012 N 0.762
ENSCING00000000010 Ciona intestinalis ENSCING00000000010 N 0.762
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.760
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.760
csin109208 Clonorchis sinensis csin109208 I 0.760
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.760
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.760
T265_00048 Opisthorchis viverrini T265_00048 I 0.760
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.760
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.760
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.759
ENSCING00000022318 Ciona intestinalis ENSCING00000022318 N 0.757
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.757
SNAPOd2T00019413001 Oikopleura dioica SNAPOd2T00019413001 N 0.757