nRc.2.0.1.g22468 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g22468 T155478_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.801 0.879
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.801 0.879
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.801 0.879
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.801 0.879
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.801 0.879
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t22468-RA C2H2 ZF 257 284
nRc.2.0.1.t22468-RA C2H2 ZF 290 314
nRc.2.0.1.t22468-RA C2H2 ZF 320 344
nRc.2.0.1.t22468-RA C2H2 ZF 350 373

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.819
KGM_22387 Danaus plexippus KGM_22387 I 0.813
TC010234 Tribolium castaneum TC010234 I 0.813
NV11451 Nasonia vitripennis NV11451 I 0.811
AGAP001291 Anopheles gambiae AGAP001291 I 0.810
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.807
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.802
GH23039 Drosophila grimshawi FBgn0130496 I 0.801
GG12590 Drosophila erecta FBgn0104878 I 0.801
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.801
GI10245 Drosophila mojavensis FBgn0133010 I 0.801
GF18915 Drosophila ananassae FBgn0095929 I 0.801
GJ11051 Drosophila virilis FBgn0198317 I 0.801
opa Drosophila melanogaster FBgn0003002 D 0.801
GD19752 Drosophila simulans FBgn0191241 I 0.801
GM10780 Drosophila sechellia FBgn0165726 I 0.801
GL21621 Drosophila persimilis FBgn0159214 I 0.801
GK13239 Drosophila willistoni FBgn0215248 I 0.801
GB54250 Apis mellifera GB54250 I 0.799
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.798
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.795
MDOA000052 Musca domestica MDOA000052 I 0.792
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.790
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.790
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.790
zic6 Danio rerio ENSDARG00000071496 I 0.788
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.788
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.788
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.788
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.787
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.782
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.781
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.781
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.781
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.781
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.781
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.781
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.781
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.780
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.778
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.778
T265_00048 Opisthorchis viverrini T265_00048 I 0.778
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.778
csin109208 Clonorchis sinensis csin109208 I 0.778
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.778
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.778
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.778
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.778
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.778
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.776
macho1 Ciona intestinalis ENSCING00000007968 I 0.776
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.775
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.773
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.771
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.768
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.768
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.768
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.764
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.761
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.759
HelroG77001 Helobdella robusta HelroG77001 N 0.758
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.756
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.756