SMU15031708 (Schmidtea mediterranea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMU15031708 T145179_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.772 0.837
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.772 0.837
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.772 0.837
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.772 0.837
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.772 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMU15031708 C2H2 ZF 232 259
SMU15031708 C2H2 ZF 265 289
SMU15031708 C2H2 ZF 295 319
SMU15031708 C2H2 ZF 325 349

Links

Other C2H2 ZF family TFs
Other Schmidtea mediterranea TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.816
T265_00048 Opisthorchis viverrini T265_00048 I 0.795
csin109208 Clonorchis sinensis csin109208 I 0.795
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.790
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.790
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.781
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.778
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.777
MDOA000052 Musca domestica MDOA000052 I 0.775
SVE_0347600 Strongyloides venezuelensis SVE_0347600 I 0.775
SSTP_0000201100 Strongyloides stercoralis SSTP_0000201100 I 0.775
SPAL_0001746600 Strongyloides papillosus SPAL_0001746600 I 0.775
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.773
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.773
AGAP001291 Anopheles gambiae AGAP001291 I 0.772
GL21621 Drosophila persimilis FBgn0159214 I 0.772
GH23039 Drosophila grimshawi FBgn0130496 I 0.772
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.772
GM10780 Drosophila sechellia FBgn0165726 I 0.772
GF18915 Drosophila ananassae FBgn0095929 I 0.772
GG12590 Drosophila erecta FBgn0104878 I 0.772
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.772
opa Drosophila melanogaster FBgn0003002 D 0.772
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.772
TC010234 Tribolium castaneum TC010234 I 0.772
KGM_22387 Danaus plexippus KGM_22387 I 0.772
GJ11051 Drosophila virilis FBgn0198317 I 0.772
GK13239 Drosophila willistoni FBgn0215248 I 0.772
GD19752 Drosophila simulans FBgn0191241 I 0.772
GI10245 Drosophila mojavensis FBgn0133010 I 0.772
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.772
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.772
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.772
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.772
ENSCING00000002517 Ciona intestinalis ENSCING00000002517 N 0.771
ENSCSAVG00000002459 Ciona savignyi ENSCSAVG00000002459 N 0.771
macho1 Ciona intestinalis ENSCING00000007968 I 0.771
ENSCSAVG00000002454 Ciona savignyi ENSCSAVG00000002454 N 0.771
ENSCING00000000012 Ciona intestinalis ENSCING00000000012 N 0.771
ENSCSAVG00000002450 Ciona savignyi ENSCSAVG00000002450 N 0.771
ENSCING00000021681 Ciona intestinalis ENSCING00000021681 N 0.771
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.771
ENSCSAVG00000002442 Ciona savignyi ENSCSAVG00000002442 N 0.771
ENSCSAVG00000002465 Ciona savignyi ENSCSAVG00000002465 N 0.771
ENSCING00000000010 Ciona intestinalis ENSCING00000000010 N 0.771
zic6 Danio rerio ENSDARG00000071496 I 0.770
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.770
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.770
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.770
NV11451 Nasonia vitripennis NV11451 I 0.770
GB54250 Apis mellifera GB54250 I 0.770
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.768
HelroG77001 Helobdella robusta HelroG77001 N 0.767
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.763
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.763
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.763
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.763
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.763
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.763
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.763
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.763
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.763
HDID_0001034301 Hymenolepis diminuta HDID_0001034301 N 0.760
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.760
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.760
TCLT_0000586501 Thelazia callipaeda TCLT_0000586501 I 0.759
WBGene00239980 Onchocerca volvulus WBGene00239980 I 0.759
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.759
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.759
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.757