ebf3b (Danio rerio)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF16422 (COE1_DBD) (none) ENSDARG00000091287 T174522_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human EBF3 (EBF transcription factor 3). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.824 0.824
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.793 0.793
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.793 0.793
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.793 0.793
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.789 0.789
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.780 0.780
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.771 0.771
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000104863 EBF1 15 241
ENSDARP00000127718 EBF1 3 229

Links

Other EBF1 family TFs
Other Danio rerio TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EBF1 Meleagris gallopavo ENSMGAG00000004896 I 0.891
ENSAPLG00000015476 Anas platyrhynchos ENSAPLG00000015476 I 0.891
ENSAMEG00000003291 Ailuropoda melanoleuca ENSAMEG00000003291 I 0.889
EBF3 Microcebus murinus ENSMICG00000008536 I 0.887
EBF3 Callithrix jacchus ENSCJAG00000014357 I 0.887
ENSCSAG00000004432 Chlorocebus sabaeus ENSCSAG00000004432 I 0.886
EBF3 Oryctolagus cuniculus ENSOCUG00000008915 I 0.886
ENSP00000347463 Macaca fascicularis ENSP00000347463 I 0.881
EBF4 Homo sapiens ENSG00000088881 D 0.873
EBF3 Tupaia belangeri ENSTBEG00000005858 I 0.870
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.865
EBF1 Felis catus ENSFCAG00000008547 I 0.839
Gfo_R004859 Geospiza fortis Gfo_R004859 I 0.837
Aan_R009520 Calypte anna Aan_R009520 I 0.837
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.824
EBF3 Homo sapiens ENSG00000108001 D 0.824
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.824
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.824
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.824
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.824
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.824
ebf3a Oryzias latipes ENSORLG00000005870 I 0.824
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.824
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.824
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.824
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.824
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.824
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.824
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.824
Ebf3 Mus musculus ENSMUSG00000010476 I 0.824
ebf3a Danio rerio ENSDARG00000100244 I 0.819
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.819
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.819
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.819
EBF3 Cavia porcellus ENSCPOG00000005096 I 0.815
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I 0.815
ENSSSCG00000010757 Sus scrofa ENSSSCG00000010757 I 0.810
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.810
ENSOARG00000005967 Ovis aries ENSOARG00000005967 I 0.810
ebf3 Xenopus tropicalis XB-GENE-962543 I 0.810
Aan_R007097 Calypte anna Aan_R007097 I 0.806
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I 0.806
ebf3a Takifugu rubripes ENSTRUG00000005721 I 0.801
ebf3.L Xenopus laevis XB-GENE-962547 I 0.801
EBF4 Oryzias latipes ENSORLG00000020414 I 0.797
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I 0.797
AGAP011437 Anopheles gambiae AGAP011437 I 0.796
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I 0.793
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.793
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.793
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.790
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.789
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.789
Ebf4 Mus musculus ENSMUSG00000053552 D 0.789
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.789
EBF1 Oryzias latipes ENSORLG00000007471 I 0.789
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.789
DAPPUDRAFT_22285 Daphnia pulex DAPPUDRAFT_22285 I 0.788
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.784
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.784
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.784
EBF4 Monodelphis domestica ENSMODG00000005256 I 0.784
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.784
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.784
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I 0.784
ENSMLUG00000004376 Myotis lucifugus ENSMLUG00000004376 I 0.783
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.780
EBF4 Canis familiaris ENSCAFG00000006631 I 0.780
EBF4 Bos taurus ENSBTAG00000037757 I 0.780
ENSPMAG00000003301 Petromyzon marinus ENSPMAG00000003301 I 0.780
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.780
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.780
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.780
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.780
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I 0.780
EBF1 Canis familiaris ENSCAFG00000017318 I 0.780
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I 0.780
EBF4 Otolemur garnettii ENSOGAG00000004688 I 0.780
ebf1a Danio rerio ENSDARG00000099849 I 0.780
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.779
EBF1 Homo sapiens ENSG00000164330 D 0.779
Ebf1 Mus musculus ENSMUSG00000057098 D 0.779
ENSFALG00000008502 Ficedula albicollis ENSFALG00000008502 I 0.779
EBF1 Echinops telfairi ENSETEG00000011711 I 0.779
EBF1 Gallus gallus ENSGALG00000003699 I 0.779
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.779
EBF1 Pan troglodytes ENSPTRG00000017477 I 0.779
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I 0.779
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.779
EBF1 Bos taurus ENSBTAG00000037508 I 0.779
EBF1 Monodelphis domestica ENSMODG00000008198 I 0.779
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I 0.779
EBF1 Oryzias latipes ENSORLG00000002342 I 0.775
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.775
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.775
ebf1b Danio rerio ENSDARG00000069196 I 0.775
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I 0.775
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.775
EBF2 Gallus gallus ENSGALG00000000242 I 0.775
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.775
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.775
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.771
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.771
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.771
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.771
EBF2 Sus scrofa ENSSSCG00000009655 I 0.771
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.771
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.771
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.771
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I 0.771
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.771
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.771
EBF2 Canis familiaris ENSCAFG00000008918 I 0.771
EBF2 Homo sapiens ENSG00000221818 D 0.771
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.771
Brh_R003197 Buceros rhinoceros Brh_R003197 I 0.771
Pvit_16838 Pogona vitticeps Pvit_16838 I 0.771
EBF2 Bos taurus ENSBTAG00000040390 I 0.771
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.771
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.771
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.771
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.771
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.771
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.771
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.771
Ebf2 Mus musculus ENSMUSG00000022053 D 0.771
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.767
Ebf4 Rattus norvegicus ENSRNOG00000007408 I 0.767
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.767
EBF1 Microcebus murinus ENSMICG00000010036 I 0.767
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.767
ENSLOCG00000001693 Lepisosteus oculatus ENSLOCG00000001693 I 0.766
EBF1 Cavia porcellus ENSCPOG00000026184 I 0.766
EBF1 Gasterosteus aculeatus ENSGACG00000018450 I 0.766
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I 0.765
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.762
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I 0.762
EBF1 Takifugu rubripes ENSTRUG00000013805 I 0.762
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I 0.762
ENSPANG00000007524 Papio anubis ENSPANG00000007524 I 0.762
EBF4 Equus caballus ENSECAG00000010003 I 0.762
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.762
EBF4 Procavia capensis ENSPCAG00000011947 I 0.760
EBF2 Equus caballus ENSECAG00000014179 I 0.758
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I 0.758
ENSSSCG00000025433 Sus scrofa ENSSSCG00000025433 I 0.757
EBF1 Equus caballus ENSECAG00000007964 I 0.757
ENSOARG00000012916 Ovis aries ENSOARG00000012916 I 0.757
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.753
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.753
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.753
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.753
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.753
EBF4 Sus scrofa ENSSSCG00000007171 I 0.753
EBF4 Cavia porcellus ENSCPOG00000004862 I 0.753
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I 0.753
TCLT_0000613901 Thelazia callipaeda TCLT_0000613901 I 0.752
Myotis_brandtii_Ebf3_10024822 Myotis brandtii Myotis_brandtii_Ebf3_10024822 I 0.750
SNAPOd2T00017027001 Oikopleura dioica SNAPOd2T00017027001 I 0.750
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 0.750
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 0.750
Pvit_12046 Pogona vitticeps Pvit_12046 I 0.750
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 0.750
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 0.750
EFV50386 Trichinella spiralis EFV50386 I 0.749
D917_06660 Trichinella nativa D917_06660 I 0.749
CGI_10023990 Crassostrea gigas CGI_10023990 I 0.749
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.749
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.749
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I 0.749
ebf2.S Xenopus laevis XB-GENE-971141 I 0.749
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.749
EBF4 Ochotona princeps ENSOPRG00000013703 I 0.749
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I 0.748
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I 0.746
LotgiG225788 Lottia gigantea LotgiG225788 I 0.744
HNAJ_0001308901 Hymenolepis nana HNAJ_0001308901 I 0.743
EBF4 Gasterosteus aculeatus ENSGACG00000016862 I 0.740
ENSONIG00000013342 Oreochromis niloticus ENSONIG00000013342 I 0.740
CapteG93575 Capitella teleta CapteG93575 I 0.740
ebf2 Oryzias latipes ENSORLG00000006408 I 0.740
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.740
EBF1 Procavia capensis ENSPCAG00000013495 I 0.739
ENSACAG00000005898 Anolis carolinensis ENSACAG00000005898 I 0.738
D918_06798 Trichuris suis D918_06798 I 0.738
ebf2.L Xenopus laevis XB-GENE-6252857 I 0.736
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I 0.734
NV10306 Nasonia vitripennis NV10306 I 0.732
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.731
ACUA010350 Anopheles culicifacies ACUA010350 I 0.731
AAEL003436 Aedes aegypti AAEL003436 I 0.731
TC001270 Tribolium castaneum TC001270 I 0.731
ebf2 Danio rerio ENSDARG00000042525 I 0.731
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.731
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.731
Alligator_sinensis_CCG017610.1 Alligator sinensis Alligator_sinensis_CCG017610.1 I 0.730
Alligator_sinensis_CCG006299.1 Alligator sinensis Alligator_sinensis_CCG006299.1 I 0.728
ASU_01180 Ascaris suum ASU_01180 I 0.725
PHUM119360 Pediculus humanus PHUM119360 I 0.722
MDOA011385 Musca domestica MDOA011385 I 0.718
L798_15574 Zootermopsis nevadensis L798_15574 I 0.718
HelroG112029 Helobdella robusta HelroG112029 I 0.718
SMAR000842 Strigamia maritima SMAR000842 I 0.716
KGM_09934 Danaus plexippus KGM_09934 I 0.714
EBF3 Ornithorhynchus anatinus ENSOANG00000012326 I 0.714
AMEM016790 Anopheles merus AMEM016790 I 0.714
nLs.2.1.2.g08363 Litomosoides sigmodontis nLs.2.1.2.g08363 I 0.714
ACOM041538 Anopheles coluzzii ACOM041538 I 0.714
nAv.1.0.1.g03521 Acanthocheilonema viteae nAv.1.0.1.g03521 I 0.712
EBF4 Felis catus ENSFCAG00000014453 I 0.710
LCUP013861 Lucilia cuprina LCUP013861 I 0.710
AARA002866 Anopheles arabiensis AARA002866 I 0.710
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.709
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I 0.709
Bm6296 Brugia malayi Bm6296 I 0.709
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.705
PTRK_0001642500 Parastrongyloides trichosuri PTRK_0001642500 I 0.705
SPAL_0001132500 Strongyloides papillosus SPAL_0001132500 I 0.705
SVE_0119400 Strongyloides venezuelensis SVE_0119400 I 0.705
EBF3 Echinops telfairi ENSETEG00000014060 I 0.705
GL10656 Drosophila persimilis FBgn0148266 I 0.705
GJ21945 Drosophila virilis FBgn0209060 I 0.705
GH20479 Drosophila grimshawi FBgn0127942 I 0.705
GG22397 Drosophila erecta FBgn0114569 I 0.705
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I 0.705
kn Drosophila melanogaster FBgn0001319 D 0.705
GK23295 Drosophila willistoni FBgn0225257 I 0.705
GM20182 Drosophila sechellia FBgn0175065 I 0.705
GE12286 Drosophila yakuba FBgn0230042 I 0.705
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.705
LOAG_18199 Loa loa LOAG_18199 I 0.705
Hsal_03265--XP_394171.3_APIME Harpegnathos saltator Hsal_03265--XP_394171.3_APIME I 0.703
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I 0.701
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I 0.700
EBF1 Tursiops truncatus ENSTTRG00000009929 I 0.700
GF11778 Drosophila ananassae FBgn0088818 I 0.700
AALB010330 Anopheles albimanus AALB010330 I 0.700
Afo_R002906 Aptenodytes forsteri Afo_R002906 I 0.700
SSTP_0000472000 Strongyloides stercoralis SSTP_0000472000 I 0.700