Alligator_sinensis_CCG006299.1 (Alligator sinensis)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Alligator_sinensis_CCG006299.1 T174797_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.862 0.862
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.862 0.862
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.862 0.862
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.862 0.862
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.853 0.853
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.853 0.853
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.797 0.797
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG006299.1 EBF1 1 217

Links

Other EBF1 family TFs
Other Alligator sinensis TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Myotis_brandtii_Ebf1_10034833 Myotis brandtii Myotis_brandtii_Ebf1_10034833 I 1.000
Alligator_sinensis_CCG000393.1 Alligator sinensis Alligator_sinensis_CCG000393.1 I 1.000
EBF1 Equus caballus ENSECAG00000007964 I 1.000
ENSPANG00000010656 Papio anubis ENSPANG00000010656 I 1.000
Pvit_12046 Pogona vitticeps Pvit_12046 I 1.000
EBF3 Dasypus novemcinctus ENSDNOG00000002588 I 1.000
ENSAPLG00000015476 Anas platyrhynchos ENSAPLG00000015476 I 0.991
EBF1 Meleagris gallopavo ENSMGAG00000004896 I 0.991
EBF3 Oryctolagus cuniculus ENSOCUG00000008915 I 0.956
ENSCSAG00000004432 Chlorocebus sabaeus ENSCSAG00000004432 I 0.956
Sakowv30011033m.g Saccoglossus kowalevskii Sakowv30011033m.g I 0.952
ENSAMEG00000006442 Ailuropoda melanoleuca ENSAMEG00000006442 I 0.928
ENSMLUG00000004376 Myotis lucifugus ENSMLUG00000004376 I 0.928
EBF4 Homo sapiens ENSG00000088881 D 0.915
Brh_R003197 Buceros rhinoceros Brh_R003197 I 0.914
Pvit_16838 Pogona vitticeps Pvit_16838 I 0.889
ASTEI06455 Anopheles stephensi ASTEI06455 I 0.885
ENSSHAG00000017239 Sarcophilus harrisii ENSSHAG00000017239 I 0.880
ENSLOCG00000009282 Lepisosteus oculatus ENSLOCG00000009282 I 0.876
ENSONIG00000004376 Oreochromis niloticus ENSONIG00000004376 I 0.876
EBF4 Monodelphis domestica ENSMODG00000005256 I 0.876
ENSGMOG00000015541 Gadus morhua ENSGMOG00000015541 I 0.866
ebf1a Danio rerio ENSDARG00000099849 I 0.866
ENSAMXG00000003402 Astyanax mexicanus ENSAMXG00000003402 I 0.866
EBF1 Taeniopygia guttata ENSTGUG00000000593 I 0.866
ENSAMEG00000003291 Ailuropoda melanoleuca ENSAMEG00000003291 I 0.864
ENSPPYG00000010836 Pongo abelii ENSPPYG00000010836 I 0.862
EBF1 Echinops telfairi ENSETEG00000011711 I 0.862
EBF1 Gorilla gorilla ENSGGOG00000000033 I 0.862
EBF1 Ornithorhynchus anatinus ENSOANG00000012338 I 0.862
ENSPPYG00000015995 Pongo abelii ENSPPYG00000015995 I 0.862
ENSMPUG00000009093 Mustela putorius furo ENSMPUG00000009093 I 0.862
EBF4 Myotis lucifugus ENSMLUG00000023832 I 0.862
EBF1 Homo sapiens ENSG00000164330 D 0.862
EBF4 Gorilla gorilla ENSGGOG00000015503 I 0.862
EBF4 Otolemur garnettii ENSOGAG00000004688 I 0.862
Ebf1 Mus musculus ENSMUSG00000057098 D 0.862
EBF1 Monodelphis domestica ENSMODG00000008198 I 0.862
ebf3 Xenopus tropicalis XB-GENE-962543 I 0.862
EBF4 Canis familiaris ENSCAFG00000006631 I 0.862
EBF1 Callithrix jacchus ENSCJAG00000019016 I 0.862
EBF4 Bos taurus ENSBTAG00000037757 I 0.862
EBF1 Bos taurus ENSBTAG00000037508 I 0.862
Myotis_brandtii_EBF4_10032372 Myotis brandtii Myotis_brandtii_EBF4_10032372 I 0.862
Ebf1 Rattus norvegicus ENSRNOG00000028845 I 0.862
EBF4 Tursiops truncatus ENSTTRG00000003459 I 0.862
EBF1 Pan troglodytes ENSPTRG00000017477 I 0.862
EBF1 Oryzias latipes ENSORLG00000007471 I 0.857
ENSONIG00000017655 Oreochromis niloticus ENSONIG00000017655 I 0.857
ENSAMEG00000011229 Ailuropoda melanoleuca ENSAMEG00000011229 I 0.857
EBF1 Loxodonta africana ENSLAFG00000017522 I 0.857
EBF1 Takifugu rubripes ENSTRUG00000009320 I 0.857
ENSPFOG00000000294 Poecilia formosa ENSPFOG00000000294 I 0.857
ENSP00000405003 Macaca fascicularis ENSP00000405003 I 0.857
Cmyd_10020950 Chelonia mydas Cmyd_10020950 I 0.853
EBF3 Anolis carolinensis ENSACAG00000008590 I 0.853
ebf4 Xenopus tropicalis XB-GENE-6030626 I 0.853
ebf1b Danio rerio ENSDARG00000069196 I 0.853
ENSXMAG00000006633 Xiphophorus maculatus ENSXMAG00000006633 I 0.853
EBF3 Macaca mulatta ENSMMUG00000011447 I 0.853
Ebf4 Mus musculus ENSMUSG00000053552 D 0.853
Ebf3 Mus musculus ENSMUSG00000010476 I 0.853
EBF3 Otolemur garnettii ENSOGAG00000007572 I 0.853
EBF3 Taeniopygia guttata ENSTGUG00000011600 I 0.853
EBF4 Oryzias latipes ENSORLG00000020414 I 0.853
ENSFALG00000001212 Ficedula albicollis ENSFALG00000001212 I 0.853
ENSPANG00000020188 Papio anubis ENSPANG00000020188 I 0.853
EBF3 Homo sapiens ENSG00000108001 D 0.853
ENSONIG00000019141 Oreochromis niloticus ENSONIG00000019141 I 0.853
ENSPFOG00000002559 Poecilia formosa ENSPFOG00000002559 I 0.853
ebf3a Danio rerio ENSDARG00000100244 I 0.853
ENSPSIG00000016691 Pelodiscus sinensis ENSPSIG00000016691 I 0.853
ebf3a Gasterosteus aculeatus ENSGACG00000009548 I 0.853
Ebf3 Rattus norvegicus ENSRNOG00000016102 I 0.853
EBF1 Oryctolagus cuniculus ENSOCUG00000008985 I 0.848
EBF3 Tursiops truncatus ENSTTRG00000014010 I 0.848
ENSPPYG00000002766 Pongo abelii ENSPPYG00000002766 I 0.848
ENSP00000347463 Macaca fascicularis ENSP00000347463 I 0.848
EBF1 Oryzias latipes ENSORLG00000002342 I 0.848
ENSGMOG00000016636 Gadus morhua ENSGMOG00000016636 I 0.848
ENSAMXG00000006585 Astyanax mexicanus ENSAMXG00000006585 I 0.848
ENSLOCG00000007615 Lepisosteus oculatus ENSLOCG00000007615 I 0.848
EBF1 Canis familiaris ENSCAFG00000017318 I 0.848
EBF1 Cavia porcellus ENSCPOG00000026184 I 0.848
ENSGACG00000010053 Gasterosteus aculeatus ENSGACG00000010053 I 0.843
ENSXMAG00000000489 Xiphophorus maculatus ENSXMAG00000000489 I 0.843
ENSPFOG00000017183 Poecilia formosa ENSPFOG00000017183 I 0.843
ebf3a Oryzias latipes ENSORLG00000005870 I 0.843
ENSONIG00000008631 Oreochromis niloticus ENSONIG00000008631 I 0.843
ENSONIG00000000451 Oreochromis niloticus ENSONIG00000000451 I 0.843
ENSXMAG00000012715 Xiphophorus maculatus ENSXMAG00000012715 I 0.843
EBF3 Cavia porcellus ENSCPOG00000005096 I 0.834
Aan_R007097 Calypte anna Aan_R007097 I 0.829
BTMF_0000130101 Brugia timori BTMF_0000130101 I 0.826
ENSXMAG00000010668 Xiphophorus maculatus ENSXMAG00000010668 I 0.825
GH12956 Drosophila grimshawi FBgn0120434 I 0.825
MCINX016126 Melitaea cinxia MCINX016126 I 0.825
Gfo_R004859 Geospiza fortis Gfo_R004859 I 0.823
Aan_R009520 Calypte anna Aan_R009520 I 0.823
EBF3 Tupaia belangeri ENSTBEG00000005858 I 0.822
ENSOARG00000005967 Ovis aries ENSOARG00000005967 I 0.814
ebf3.L Xenopus laevis XB-GENE-962547 I 0.814
ENSLOCG00000001693 Lepisosteus oculatus ENSLOCG00000001693 I 0.814
ENSSTOG00000006113 Ictidomys tridecemlineatus ENSSTOG00000006113 I 0.811
ENSFALG00000008502 Ficedula albicollis ENSFALG00000008502 I 0.810
EBF1 Gallus gallus ENSGALG00000003699 I 0.810
EBF4 Sus scrofa ENSSSCG00000007171 I 0.806
ENSBTAP00000042518-D1 Bos grunniens ENSBTAP00000042518-D1 I 0.806
Ebf4 Rattus norvegicus ENSRNOG00000007408 I 0.806
EBF4 Cavia porcellus ENSCPOG00000004862 I 0.806
EBF1 Gasterosteus aculeatus ENSGACG00000018450 I 0.805
EBF4 Equus caballus ENSECAG00000010003 I 0.805
EBF4 Pteropus vampyrus ENSPVAG00000006830 I 0.802
EBF1 Gasterosteus aculeatus ENSGACG00000020458 I 0.802
EBF1 Microcebus murinus ENSMICG00000010036 I 0.802
ENSOARG00000009825 Ovis aries ENSOARG00000009825 I 0.797
EBF2 Taeniopygia guttata ENSTGUG00000004267 I 0.797
EBF2 Gallus gallus ENSGALG00000000242 I 0.797
EBF2 Sus scrofa ENSSSCG00000009655 I 0.797
Ebf2 Rattus norvegicus ENSRNOG00000011548 I 0.797
ebf3a Takifugu rubripes ENSTRUG00000005721 I 0.797
ENSSSCG00000010757 Sus scrofa ENSSSCG00000010757 I 0.797
EBF2 Gorilla gorilla ENSGGOG00000001585 I 0.797
EBF2 Loxodonta africana ENSLAFG00000022465 I 0.797
Afo_R003215 Aptenodytes forsteri Afo_R003215 I 0.797
Ebf2 Mus musculus ENSMUSG00000022053 D 0.797
ENSLACG00000017271 Latimeria chalumnae ENSLACG00000017271 I 0.797
EBF2 Canis familiaris ENSCAFG00000008918 I 0.797
EBF2 Bos taurus ENSBTAG00000040390 I 0.797
ENSNLEG00000016189 Nomascus leucogenys ENSNLEG00000016189 I 0.797
ENSAMEG00000000326 Ailuropoda melanoleuca ENSAMEG00000000326 I 0.797
ENSAPLG00000009260 Anas platyrhynchos ENSAPLG00000009260 I 0.797
ENSMPUG00000003195 Mustela putorius furo ENSMPUG00000003195 I 0.797
EBF2 Meleagris gallopavo ENSMGAG00000000791 I 0.797
EBF2 Oryctolagus cuniculus ENSOCUG00000011972 I 0.797
EBF2 Homo sapiens ENSG00000221818 D 0.797
EBF1 Felis catus ENSFCAG00000008547 I 0.797
ENSPANG00000020231 Papio anubis ENSPANG00000020231 I 0.797
ENSFALG00000011234 Ficedula albicollis ENSFALG00000011234 I 0.797
EBF2 Myotis lucifugus ENSMLUG00000011509 I 0.797
ENSPPYG00000018454 Pongo abelii ENSPPYG00000018454 I 0.797
EBF2 Pan troglodytes ENSPTRG00000003058 I 0.797
ENSPSIG00000016837 Pelodiscus sinensis ENSPSIG00000016837 I 0.797
EBF4 Ochotona princeps ENSOPRG00000013703 I 0.797
EBF2 Dasypus novemcinctus ENSDNOG00000040488 I 0.797
EBF2 Otolemur garnettii ENSOGAG00000010783 I 0.797
EBF2 Callithrix jacchus ENSCJAG00000019921 I 0.795
EBF2 Cavia porcellus ENSCPOG00000001463 I 0.793
EBF2 Pteropus vampyrus ENSPVAG00000024254 I 0.793
EBF1 Takifugu rubripes ENSTRUG00000013805 I 0.792
ENSLOCG00000015225 Lepisosteus oculatus ENSLOCG00000015225 I 0.788
ebf2 Takifugu rubripes ENSTRUG00000011528 I 0.788
AALB010330 Anopheles albimanus AALB010330 I 0.786
ebf2 Gasterosteus aculeatus ENSGACG00000008451 I 0.783
ebf2 Tetraodon nigroviridis ENSTNIG00000015845 I 0.783
EBF4 Dasypus novemcinctus ENSDNOG00000049548 I 0.783
EBF4 Procavia capensis ENSPCAG00000011947 I 0.781
ENSCSAVG00000000458 Ciona savignyi ENSCSAVG00000000458 I 0.780
ebf2 Xenopus tropicalis XB-GENE-971136 I 0.779
ebf2.L Xenopus laevis XB-GENE-6252857 I 0.779
ENSPFOG00000009617 Poecilia formosa ENSPFOG00000009617 I 0.779
EBF4 Gasterosteus aculeatus ENSGACG00000016862 I 0.779
DAPPUDRAFT_22285 Daphnia pulex DAPPUDRAFT_22285 I 0.778
ebf2 Oryzias latipes ENSORLG00000006408 I 0.774
EBF4 Callithrix jacchus ENSCJAG00000021027 I 0.774
ENSXMAG00000017859 Xiphophorus maculatus ENSXMAG00000017859 I 0.774
ebf2.S Xenopus laevis XB-GENE-971141 I 0.774
ENSPANG00000007524 Papio anubis ENSPANG00000007524 I 0.771
CapteG93575 Capitella teleta CapteG93575 I 0.770
LotgiG225788 Lottia gigantea LotgiG225788 I 0.765
ENSPFOG00000023105 Poecilia formosa ENSPFOG00000023105 I 0.763
ebf2 Danio rerio ENSDARG00000042525 I 0.760
ENSNLEG00000004218 Nomascus leucogenys ENSNLEG00000004218 I 0.760
SPU_004702 Strongylocentrotus purpuratus SPU_004702 I 0.760
EBF1 Tursiops truncatus ENSTTRG00000009929 I 0.760
EBF4 Felis catus ENSFCAG00000014453 I 0.753
EBF4 Oryctolagus cuniculus ENSOCUG00000023917 I 0.751
EBF2 Equus caballus ENSECAG00000014179 I 0.749
EBF2 Felis catus ENSFCAG00000003607 I 0.748
CGI_10023990 Crassostrea gigas CGI_10023990 I 0.747
ENSCING00000003209 Ciona intestinalis ENSCING00000003209 I 0.747
TC001270 Tribolium castaneum TC001270 I 0.742
ENSP00000347463-D1 Bos grunniens ENSP00000347463-D1 I 0.742
KGM_09934 Danaus plexippus KGM_09934 I 0.742
ENSLACG00000017503 Latimeria chalumnae ENSLACG00000017503 I 0.740
GG22397 Drosophila erecta FBgn0114569 I 0.737
GM20182 Drosophila sechellia FBgn0175065 I 0.737
PHUM119360 Pediculus humanus PHUM119360 I 0.737
kn Drosophila melanogaster FBgn0001319 D 0.737
GE12286 Drosophila yakuba FBgn0230042 I 0.737
GF11778 Drosophila ananassae FBgn0088818 I 0.737
L798_15574 Zootermopsis nevadensis L798_15574 I 0.737
EBF1 Procavia capensis ENSPCAG00000013495 I 0.734
nRc.2.0.1.g06532 Romanomermis culicivorax nRc.2.0.1.g06532 I 0.733
MDOA011385 Musca domestica MDOA011385 I 0.733
GH20479 Drosophila grimshawi FBgn0127942 I 0.733
GJ21945 Drosophila virilis FBgn0209060 I 0.733
GL10656 Drosophila persimilis FBgn0148266 I 0.733
GB42304 Apis mellifera GB42304 I 0.733
GA24435 Drosophila pseudoobscura FBgn0245832 I 0.733
TCLT_0000613901 Thelazia callipaeda TCLT_0000613901 I 0.733
GK23295 Drosophila willistoni FBgn0225257 I 0.733
ENSPTRG00000039291 Pan troglodytes ENSPTRG00000039291 I 0.729
ebf3b Danio rerio ENSDARG00000091287 I 0.728
TTRE_0000372001 Trichuris trichiura TTRE_0000372001 I 0.728
GI21022 Drosophila mojavensis FBgn0143754 I 0.728
NV10306 Nasonia vitripennis NV10306 I 0.727
ENSONIG00000013342 Oreochromis niloticus ENSONIG00000013342 I 0.727
AGAP011437 Anopheles gambiae AGAP011437 I 0.724
EBF2 Monodelphis domestica ENSMODG00000016702 I 0.724
ENSNLEG00000001518 Nomascus leucogenys ENSNLEG00000001518 I 0.719
HelroG112029 Helobdella robusta HelroG112029 I 0.719
EFV50386 Trichinella spiralis EFV50386 I 0.714
nDi.2.2.2.g04990 Dirofilaria immitis nDi.2.2.2.g04990 I 0.714
LOAG_18199 Loa loa LOAG_18199 I 0.714
D917_06660 Trichinella nativa D917_06660 I 0.714
AAEL003436 Aedes aegypti AAEL003436 I 0.713
nLs.2.1.2.g08363 Litomosoides sigmodontis nLs.2.1.2.g08363 I 0.710
Bm6296 Brugia malayi Bm6296 I 0.710
ENSBTAP00000053340-D3 Bos grunniens ENSBTAP00000053340-D3 I 0.710
SMU15024001 Schmidtea mediterranea SMU15024001 I 0.710
HNAJ_0001308901 Hymenolepis nana HNAJ_0001308901 I 0.706
scaffold24-EXSNAP2012.58 Pristionchus exspectatus scaffold24-EXSNAP2012.58 I 0.703
Afo_R002906 Aptenodytes forsteri Afo_R002906 I 0.700
WUBG_00630 Wuchereria bancrofti WUBG_00630 I 0.700